KEY RESOURCES TABLE.

RESOURCE	SOURCE	IDENTIFIER
Deposited Data
NCI-SCLC cell line methylation (850K array)	This paper and (Krushkal et al., 2020)	GSE145156
UTSW cell line RNA-seq	(McMillan et al., 2018)	dbDAP phs001823.v1.p1
CellMinerCDB cell line data	(Rajapakse et al., 2018)	https://discover.nci.nih.gov/cellminercdb/
Software and Algorithms
ChAMP	(Tian et al., 2017)	https://bioconductor.org/packages/release/bioc/html/ChAMP.html
STAR aligner	(Dobin et al., 2013)	https://github.com/alexdobin/STAR
Cufflinks	(Trapnell et al., 2012)	http://cole-trapnell-lab.github.io/cufflinks/
Ape	(Paradis et al., 2004)	https://cran.r-project.org/web/packages/ape/index.html
Relaimpo	(Gromping, 2006)	https://cran.r-project.org/web/packages/relaimpo/index.html
dynamicTreeCut	(Langfelder et al., 2008)	https://cran.r-project.org/web/packages/dynamicTreeCut/index.html
ComplexHeatmap	(Gu et al., 2016)	https://bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html
Rtsne	(van der Maaten, 2014)	https://cran.r-project.org/web/packages/Rtsne/index.html
clusterProfiler	(Yu et al., 2012)	https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
ReactomePA	(Yu and He, 2016)	https://bioconductor.org/packages/release/bioc/html/ReactomePA.html
Partek Genomics Suite (software for analysis of microarray data)	Partek	https://www.partek.com/partek-genomics-suite/
GraphPad Prism 7 (software for drawing graphs and statistics analysis)	GraphPad
Analysis scripts	This paper	https://zenodo.org/record/3959142