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. 2020 Jul 10;12(10):1751–1764. doi: 10.1093/gbe/evaa142

Fig. 5.

Fig. 5

Annotation of haplotype-related TEs and classification of haplogroups. (a) The DIAPH2 gene has 18 intronic TEs. The variants bar displays the 18 intronic TEs and the green and purple bars illustrate gene and transcript structure, respectively. (b) The HDX gene with a 3,539-bp deletion. The upper part of the diagram shows the HDX gene structure, in which green, purple, and red bars illustrate gene structure, transcript structure, and deletion variation, respectively. The bottom part of the diagram shows the PCR and sequencing results for the HDX gene within six different breeds of pigs. (c) The TRO gene with a 132-bp deletion. The content description is the same as the HDX gene. (d) The LOC100520228 gene (SMIM1 gene) with a 1,064-bp deletion. The content description is the same as the HDX gene.