Table 3.
The presence of plasmids (based on the identification of plasmid replicons) in serotypes and genetic subpopulations of non-typhoid Salmonella , categorized according to the plasmids’ estimated size into ‘small’ (<6000 bp), ‘intermediate’ (≥6 000 bp, <100000 bp) and ‘large’ (≥100000 bp). The total number and the extent of overlap between plasmid size groups within serotype and genetic subpopulations are presented
|
Plasmid size* category |
Grouping method |
Found in (n) |
Alone |
Overlap with other plasmid size categories |
|---|---|---|---|---|
|
Small (<6000 bp) |
Serotype |
36 |
0 (0 %) |
36 (100 %) |
|
Subpopulation |
94 |
11 (11.7 %) |
83 (88.3 %) |
|
|
Intermediate (≥6000 bp, <100000 bp) |
Serotype |
37 |
0 (0 %) |
37 (100 %) |
|
Subpopulation |
103 |
20 (19.4 %) |
83 (80.6 %) |
|
|
Large (≥100000 bp) |
Serotype |
34 |
1 (2.9 %) |
33 (97.1 %) |
|
Subpopulation |
77 |
11 (14.3 %) |
66 (85.7 %) |
*Approximate average sizes for Col/Inc plasmid groups were determined using Carattoli et al. [19] (as detailed in the the Methods section).