Skip to main content
. Author manuscript; available in PMC: 2020 Nov 5.
Published in final edited form as: Environ Microbiol. 2019 Jul 15;21(12):4478–4487. doi: 10.1111/1462-2920.14726

Table 1.

Genomic typing of Listeria monocytogenes isolates recovered in Brazil from 1978 to 2013.

Isolate Sourcea Stateb Year Lineage Serotype Serogroupc CC (MLST)d ST (MLST)d SL (cgMLST)e CT (cgMLST)e Accession numbers
CLIST 2140 Human – Placenta PE 1978 II 1/2a IIa CC7 ST12 SL7 CT720 ERR3199887
CLIST 732 Raw beef MT 2009 II 1/2a IIa CC8 ST8 SL8 CT4418 ERR3199900
CLIST 3727 Raw beef SP 2003 II 1/2a IIa CC8 ST1419 SL8 CT4419 ERR3199902
CLIST 3864 Raw beef RS 2002 II 1/2a IIa CC121 ST121 SL121 CT4428 ERR3199903
19 PE MG 2009 II 1/2c IIc CC9 ST9 SL9 CT4420 ERR3199909
45 Raw beef MG 2010 II 1/2c IIc CC9 ST9 SL9 CT4424 ERR3199911
227 PE RS 2010 II 1/2c IIc CC9 ST9 SL9 CT4422 ERR3199910
508 Raw beef MG 2012 II 1/2c IIc CC9 ST9 SL9 CT4420 ERR3199912
581 Raw beef MG 2012 II 1/2c IIc CC9 ST9 SL9 CT4423 ERR3199913
CLIST 2137 Human – CSF PR 1983 II 1/2a IIc CC9 ST9 SL9 CT4425 ERR3199886
CLIST 3186 Raw beef SP 2006 II 1/2a IIc CC9 ST9 SL9 CT4426 ERR3199901
CLIST 3726 Raw beef SP 2003 II 1/2c IIc CC9 ST9 SL9 CT4421 ERR3199914
CLIST 3732 Human – CSF DF 1989 II 1/2a IIc CC9 ST9 SL9 CT4427 ERR3199888
7 Raw beef MG 2009 I 1/2b IIb CC3 ST3 SL3 CT4448 ERR3199904
CLIST 441 Raw beef MT 2010 I 1/2b IIb CC3 ST3 SL3 CT4447 ERR3199905
CLIST 2083 Human – Blood RJ 2008 I 1/2b IIb CC3 ST3 SL3 CT4444 ERR3199889
CLIST 2138 Human – CSF SP 1982 I 1/2b IIb CC3 ST3 SL3 CT4445 ERR3199890
CLIST 3865 Raw beef SP 2002 I 1/2b IIb CC3 ST3 SL3 CT4446 ERR3199906
CLIST 3869 Raw beef RJ 2004 I 1/2b IIb CC3 ST3 SL3 CT4449 ERR3199907
CLIST 3870 Raw beef MT 2004 I 1/2b IIb CC288 ST288 SL288 CT4439 ERR3199908
CLIST 1011 Human – Blood SP 1985 I 4b IVb CC1 ST1 SL1 CT4437 ERR3199891
CLIST 1015 Human – Blood SP 1985 I 4b IVb CC1 ST1 SL1 CT4438 ERR3199892
CLIST 3735 Human – Blood SP 1985 I 4b IVb CC1 ST1 SL1 CT4436 ERR3199898
233 PE MG 2012 I 4b IVb CC2 ST2 SL2 CT4431 ERR3199915
CLIST 3723 Human – CSF RJ 1990 I 4b IVb CC2 ST2 SL2 CT4433 ERR3199896
CLIST 3724 Raw beef RJ 2003 I 4b IVb CC2 ST2 SL2 CT4434 ERR3199920
CLIST 3729 PE-animal RS 1991 I 4b IVb CC2 ST2 SL2 CT4430 ERR3199917
CLIST 3739 Human – CSF PR 2000 I 4b IVb CC2 ST2 SL2 CT4432 ERR3199899
CLIST 3734 Human – CSF PE 1989 I 4b IVb-v1 CC218 ST218 SL218 CT4015 ERR3199897
CLIST 2930 Human – Blood RJ 2004 I 4b IVb-v1 CC218 ST218 SL218 CT4440 ERR3199895
CLIST 2168 Human – CSF RJ 2007 I 4b IVb-v1 CC218 ST218 SL218 CT4441 ERR3199894
1282 PE SP 2013 I 4b IVb-v1 CC218 ST218 SL218 CT4442 ERR3199916
74 Raw beef MG 2010 I 4b IVb-v1 CC218 ST218 SL218 CT4443 ERR3199918
CLIST 2167 Human – CSF SP 1997 I 4b IVb CC315 ST520 SL315 CT4429 ERR3199893
CLIST 3192 Raw beef SP 2006 I 4b IVb CC315 ST520 SL315 CT4429 ERR3199919
a

PE, production environment; CSF, cerebrospinal fluid.

b

Brazilian state: PE, Pernambuco; MT, Mato Grosso; SP, São Paulo; RS, Rio Grande do Sul; MG, Minas Gerais; PR, Paraná; DF, Distrito Federal; RJ, Rio de Janeiro.

d

Clonal complex (CC) and sequence type (ST) defined according to Ragon et al. (2008).

e

Sublineage (SL) and cgMLST type (CT) defined according to Moura et al. (2016).