Table 2.

Amount of sequences derived from biopsies.

Time point of treatment	Patient group	Patient #	Pairs of raw reads	Merged reads	Reads in OTUs
Treatment baseline	Relapse	1	87,925	82,231	72,268
		3	114,584	107,584	90,415
		8	589,051	557,459	458,963
		9	243,332	230,916	181,417
	No relapse	5	100,868	57,224	44,572
		6	59,695	55,381	45,911
		7	139,849	130,278	90,919
Post-treatment	Relapse	3	157,325	150,378	127,160
		8	32,964	27,495	18,646
		9	100,914	75,526	64,074
	No relapse	4	127,363	105,692	81,083
		5	200,621	156,633	134,519
		6	60,609	56,400	48,346
		7	96,892	91,538	80,191
Total			2,111,992	1,884,735	1,538,484