Table 1.
Patient characteristics of the COVID-19 cases used for the genome analysis of SARS-CoV-2.
| Sl. No | Accession No. (NCBI/GISAID) | Isolate name | Sequencing Technology | Coverage | Geographical Location | Age | Gender | Patient status |
|---|---|---|---|---|---|---|---|---|
| 1. | NC_045512 - WU | Wuhan-Hu-1 | Illumina | NA | China/Wuhan | NA | NA | Ref. seq. |
| 2. | MT012098 - KL | SARS-CoV-2/human/IND/29/2020 | Illumina | NA | India/Kerala | NA | NA | NA |
| 3. | EPI_ISL_428482 | hCoV-19/India/nimh-0182/2020 | Oxford nanopore technology MinION | 1,900x | India/Karnataka | 26 | Male | NA |
| 4. | EPI_ISL_436447 | hCoV-19/India/KA-NCDC-4055/2020 | Oxford nanopore technology MinION | 1,294.84x | India/Karnataka | 18 | Male | NA |
| 5. | EPI_ISL_428485 | hCoV-19/India/KA-nimh-0834/2020 | Oxford nanopore technology MinION | 700x | India/Karnataka | 32 | Male | Asymptomatic |
| 6. | EPI_ISL_486405 | hCoV-19/India/KA-nimh-14709/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 34 | Male | Asymptomatic |
| 7. | EPI_ISL_516078 | hCoV-19/India/KA-nimh-1600/2020 | Oxford nanopore technology MinION | 1814.56x | India/Karnataka | 21 | Female | Released |
| 8. | EPI_ISL_428484 | hCoV-19/India/KA-nimh-0351/2020 | Oxford nanopore technology MinION | 1200x | India/Karnataka | 55 | Male | NA |
| 9. | EPI_ISL_486402 | hCoV-19/India/KA-nimh-11076/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 30 | Female | Asymptomatic |
| 10. | EPI_ISL_428480 | hCoV-19/India/KA-nimh-0116/2020 | Oxford nanopore technology MinION | 900x | India/Karnataka | 28 | Female | NA |
| 11. | EPI_ISL_436139 | hCoV-19/India/KA-nimh-3970/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 20 | Male | Symptomatic |
| 12. | EPI_ISL_436140 | hCoV-19/India/KA-nimh-4376/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 52 | Female | Asymptomatic |
| 13. | EPI_ISL_436138 | hCoV-19/India/KA-nimh-3952/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 38 | Male | Asymptomatic |
| 14. | EPI_ISL_428481 | hCoV-19/India/KA-nimh-0130/2020 | Oxford nanopore technology MinION | 3000x | India/Karnataka | 55 | Male | NA |
| 15. | EPI_ISL_428487 | hCoV-19/India/KA-nimh-1071/2020 | Oxford nanopore technology MinION | 1600x | India/Karnataka | 25 | Male | NA |
| 16. | EPI_ISL_428486 | hCoV-19/India/KA-nimh-0996/2020 | Oxford nanopore technology MinION | 2000X | India/Karnataka | 43 | Male | NA |
| 17. | EPI_ISL_428483 | hCoV-19/India/KA-nimh-0318/2020 | Oxford nanopore technology MinION | 4600x | India/Karnataka | 19 | Male | NA |
| 18. | EPI_ISL_516077 | hCoV-19/India/KA-nimh-1453/2020 | Oxford nanopore technology MinION | 1000.31x | India/Karnataka | 23 | Male | Released |
| 19. | EPI_ISL_515948 | hCoV-19/India/KA-nimh-11074/2020 | Oxford nanopore technology MinION | 1,510x (average) | India/Karnataka | 10 | Male | Released |
| 20. | EPI_ISL_515953 | hCoV-19/India/KA-nimh-12171/2020 | Oxford nanopore technology MinION | 726x (average) | India/Karnataka | 35 | Female | Released |
| 21. | EPI_ISL_436156 | hCoV-19/India/KA-nimh-1596/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 55 | Female | Asymptomatic |
| 22. | EPI_ISL_436141 | hCoV-19/India/KA-nimh-4378/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 27 | Female | Asymptomatic |
| 23. | EPI_ISL_436137 | hCoV-19/India/KA-nimh-2873/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 28 | Female | Asymptomatic |
| 24. | EPI_ISL_436157 | hCoV-19/India/KA-nimh-1598/2020 | Oxford nanopore technology MinION | NA | India/Karnataka | 50 | Female | Asymptomatic |
| 25. | EPI_ISL_428479 | hCoV-19/India/KA-nimh-0113/2020 | Oxford nanopore technology MinION | 3000x | India/Karnataka | 68 | Male | NA |
| 26. | EPI_ISL_528426 | hCoV-19/India/MH-IGIB-D2/2020 | Oxford nanopore technology MinION | NA | India/Maharashtra | 24 | Female | NA |
| 27. | EPI_ISL_436438 | hCoV-19/India/MH-NCDC-3835/2020 | Oxford nanopore technology MinION | 1,467.2x | India/Maharashtra | NA | Male | NA |
| 28. | EPI_ISL_436446 | hCoV-19/India/MH-NCDC-3985/2020 | Oxford nanopore technology MinION | 673.53x | India/Maharashtra | 25 | Male | NA |
| 29. | EPI_ISL_436442 | hCoV-19/India/MH-NCDC-3950/2020 | Oxford nanopore technology MinION | 1,345.3x | India/Maharashtra | 31 | Male | NA |
| 30. | EPI_ISL_436437 | hCoV-19/India/DL-NCDC-3831/2020 | Oxford nanopore technology MinION | 1,531.56x | India/Delhi | 56 | Male | NA |
| 31. | EPI_ISL_436443 | hCoV-19/India/MP-NCDC-3961/2020 | Oxford nanopore technology MinION | 1,346.03x | India/Madhya Pradesh | 33 | Male | NA |
| 32. | EPI_ISL_455773 | hCoV-19/India/OR-RMRC22/2020 | Illumina | 179x | India/Odisha | 29 | Male | NA |
| 33. | EPI_ISL_463046 | hCoV-19/India/OR-ILSCV16495/2020 | Illumina | 355x | India/Odisha | 37 | Male | NA |
| 34. | EPI_ISL_463080 | hCoV-19/India/OR-ILSCV20598/2020 | Illumina | 403x | India/Odisha | 58 | Male | NA |
| 35. | EPI_ISL_463091 | hCoV-19/India/OR-ILSCV27412/2020 | Illumina | 47x | India/Odisha | 20 | Female | NA |
| 36. | EPI_ISL_463048 | hCoV-19/India/OR-ILSCV16508/2020 | Illumina | 275x | India/Odisha | 35 | Male | NA |
| 37. | EPI_ISL_463021 | hCoV-19/India/OR-ILSCV13695/2020 | Illumina | 764x | India/Odisha | 29 | Male | NA |
| 38. | EPI_ISL_463041 | hCoV-19/India/OR-ILSCV15937/2020 | Illumina | 638x | India/Odisha | 50 | Male | NA |
| 39. | EPI_ISL_463093 | hCoV-19/India/OR-ILSCV28955/2020 | Illumina | 84x | India/Odisha | 55 | Male | NA |
NA = Not Available.