Table 2.
Repeat proportions [%] estimated for unassembled sequence reads and genome assemblies of S. intermedia clones 8410 and 7747.
| Repeat | 8410 | 8410 | 7747 |
|---|---|---|---|
| Illumina reads | Assembly | Assembly | |
| Ty3/gypsy | |||
| Athila | 7.44 | 7.23 | 8.57 |
| CRM | 1.09 | 1.02 | 1.13 |
| Reina | 0.36 | 0.32 | 0.30 |
| Galadriel | 0.05 | 0.04 | 0.05 |
| Tekay | 0.02 | 0.00 | 0.00 |
| Ty1/copia | |||
| Ale | 1.87 | 1.78 | 1.79 |
| Ivana | 0.94 | 0.91 | 0.97 |
| Tork | 0.69 | 0.71 | 0.70 |
| Ikeros | 0.40 | 0.37 | 0.39 |
| Unclassified | 0.23 | 0.21 | 0.27 |
| LTR unclass | 1.01 | 0.93 | 1.08 |
| LINE | 0.37 | 0.42 | 0.49 |
| Satellite | 0.17 | 0.06 | 0.09 |
| Microsat. (GA)n | 0.67 | 1.02 | 0.98 |
| rDNA | 0.47 | 0.34 | 0.06 |
| Unclassified | 4.21 | 3.11 | 3.35 |
| Total | 20.00 | 18.49 | 20.22 |
| RepeatScout | n.a | 23.11 | 25.58 |