Table I.
Reads mapping summary of the four groups.
Sample | Raw reads | Clean reads | Total mapped (%) | Error rate, % | Q20, % | Q30, % | GC content, % |
---|---|---|---|---|---|---|---|
Control 1 | 46,524,694 | 46,012,484 | 43,968,009 (95.56) | 0.0239 | 98.42 | 95.31 | 51.44 |
Control 2 | 55,153,734 | 54,522,550 | 52,161,079 (95.67) | 0.0241 | 98.34 | 95.11 | 51.22 |
Control 3 | 51,084,072 | 50,472,388 | 48,406,455 (95.91) | 0.0246 | 98.16 | 94.64 | 51.60 |
LPS 1 | 54,040,422 | 53,383,494 | 51,070,101 (95.67) | 0.0244 | 98.20 | 94.78 | 51.92 |
LPS 2 | 53,793,660 | 53,156,402 | 50,867,107 (95.69) | 0.0242 | 98.31 | 95.04 | 51.87 |
LPS 3 | 48,673,560 | 48,055,566 | 45,998,851 (95.72) | 0.0243 | 98.23 | 94.88 | 51.89 |
LPS+BBR 1 | 55,773,654 | 55,091,394 | 52,759,191 (95.77) | 0.0244 | 98.22 | 94.83 | 52.65 |
LPS+BBR 2 | 51,508,862 | 50,889,204 | 48,767,843 (95.83) | 0.0242 | 98.31 | 95.03 | 52.53 |
LPS+BBR 3 | 48,967,886 | 48,415,432 | 46,393,264 (95.82) | 0.0240 | 98.36 | 95.16 | 52.16 |
LPS+DMSO 1 | 47,007,982 | 46,428,692 | 44,443,027 (95.72) | 0.0241 | 98.32 | 95.08 | 51.97 |
LPS+DMSO 2 | 56,177,300 | 55,495,184 | 53,114,736 (95.71) | 0.0243 | 98.26 | 94.92 | 52.43 |
LPS+DMSO 3 | 55,783,230 | 55,117,324 | 52,849,178 (95.88) | 0.0244 | 98.22 | 94.81 | 52.12 |
LPS, lipopolysaccharide; BBR, berberine; G, guanine; C, cytosine.