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. 2020 Nov 7;21:507. doi: 10.1186/s12859-020-03844-4

Table 1.

Average AUC values of SEPT and SEP by training model on one cell line data and test on another cell line data in running 10 times

Model Test
train
GM12878 HMEC HUVEC HeLa-S3 IMR90 K562 NHEK
SEPT GM12878 * 0.63 0.68 0.66 0.67 0.62 0.62
HMEC 0.59 * 0.57 0.61 0.67 0.56 0.59
HUVEC 0.62 0.62 * 0.66 0.63 0.58 0.64
HeLa-S3 0.61 0.62 0.69 * 0.66 0.63 0.66
IMR90 0.58 0.65 0.62 0.59 * 0.56 0.62
K562 0.64 0.61 0.66 0.66 0.62 * 0.64
NHEK 0.62 0.63 0.66 0.67 0.66 0.59 *
SEP GM12878 * 0.57 0.62 0.59 0.57 0.55 0.55
HMEC 0.51 * 0.53 0.54 0.60 0.50 0.55
HUVEC 0.59 0.55 * 0.58 0.57 0.56 0.55
HeLa-S3 0.56 0.56 0.60 * 0.58 0.54 0.58
IMR90 0.53 0.61 0.56 0.55 * 0.51 0.57
K562 0.56 0.53 0.54 0.53 0.53 * 0.53
NHEK 0.53 0.57 0.56 0.55 0.56 0.50 *