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. 2020 Nov 7;11:30. doi: 10.1186/s13100-020-00225-9

Table 1.

Whole-genome sequencing of 23 M. hominis strains

Strain Short-read sequencing Long-read sequencing
Protocol Generated data (Mb) Est. coverage (X) Technology Kit Generated data (Mb) Est. coverage (X) Median read length/kb
FBG 2 × 300 1612 2067 Nanopore SQK-RAD003 3542 4541 2.5
8958 2 × 300 157 231 Nanopore SQK-RAD003 657 966 4.5
2539 2 × 300 2344 3119 Nanopore SQK-LSK108 384 511 12.6
A136 2 × 300 240 344 Nanopore EXP-NBD103 + SQK-LSK108 707 1016 13.6
SP2565 2 × 300 205 287 Nanopore 1092 1533 10.5
475 2 × 300 184 257 Nanopore 638 889 5.3
SS10 2 × 300 1648 2353 Nanopore 756 1080 5.7
SS25 2 × 300 1865 2772 Nanopore 732 1088 8.3
VO31120 2 × 250 89 130 Nanopore 728 1069 6.3
SP10291 2 × 250 80 106 Nanopore 562 749 4.4
SP3615 2 × 250 99 138 PacBio SMRTbell Template Prep Kit 1.0 + Sequel Binding and Internal Control Kit 2.1 7447 10,401 2.9
727 J Nanopore EXP-NBD103 + SQK-LSK108 17 21 5.2
942 J Nanopore 38 47 44.1
2740 Nanopore 15 16 4.1
7388VA Nanopore 39 47 41.2
7447VA Nanopore 59 66 1.7
10936VA Nanopore 53 66 3.0
12256 U Nanopore 35 42 14.5
14352VA Nanopore 37 47 32.3
16753 Nanopore 7 9 4.4
18847 Nanopore 38 49 45.7
19791 Nanopore 44 52 4.6
21127VA Nanopore 38 44 42.4