Table 2.
Presence and genomic position of mobile genetic elements
| Strain | Genome / bp |
ISMhom-1a / bp x – bp y |
MHoV-1b /bp x – bp y |
tet(M)c / bp x – bp y |
ICEHo-I d / bp x – bp y |
ICEHo-II e / bp x – bp y |
|---|---|---|---|---|---|---|
| FBG | 780,024 |
85,753–87,012 349,147–350,406 404,580–403,321 593,967–595,226 708,740–709,999 |
– | – |
136,576–109,789 508,629–535,415 747,727–774,523 307,652 – 309385f (675938–675,828) g |
– |
| 8958 | 680,851 | – | – | – | – | – |
| 2539 | 751,326 | – | 407,989–392,742 | 619,357–644,618 | – | – |
| SP10291 | 750,518 | 293,110–294,369 | – | – | 646,629–616,362 | 13,153–31,485 |
| A136 | 696,338 | – | 301,276–286,023 | – | – | – |
| SP2565 | 712,781 | – | 91,014–75,747 | 593,982–619,248 | – | – |
| 475 | 717,789 | – | 419,145–434,419 | 590,550–615,528 | – | – |
| SS10 | 700,146 | 637,906–622,632 | – | – | – | |
| SS25 | 672,843 | – | – | – | – | – |
| VO31120 | 681,374 | – | – | – | – | – |
| SP3615 | 715,990 | – | – | 613,432–620,439 h | – | 543,628–561,978 |
| TO0613i | 766,228 | – | 694,774–710,019 | – |
49,522–18,905 310,644–280,027 |
– |
| PL5 |
767,767 (JRXA01) j |
– | – | 74,216–99,476(_000009.1) j |
[89,704–90,264] – [1950–3140] (_000010.1) j (_000001.1) [1814–1029] – [18,377–17,187] (_000005.1) (_000004.1) |
– |
MGE elements used in BLAST analysis: a ISMhom-1 (acc.-no. dq973625); b MHoV-1 prophage region from repB to exiS (acc.- no. CP009652; bp 596,991-bp 581,744); c tet(M) of SPROTT (acc.- no. CP011538; bp 573,817–599,077); d ICEHo-I region of FBG (CDS1 to CDS22, bp 508,629 – bp 535,415); e ICEHo-II region of SP3615 (CDS1 to CDS22, bp 543,628 – bp 561,978); fICEHo-I vestige (corresponding FBG ICEHo-I-2; bp 508,629 – bp 510,361); g ICEHo-I vestige (corresponding to FBG ICEHo-I-2 untranslated region 535,715–535,827); h truncated tet(M) transposon corresponding to bp 577,017 - bp 584,024 of SPROTT; accession numbers of i TO0613 genome (acc.-no CP033021.1) and j Pl5 contigs (JRXA01_000001.1 to JRXA01_000010.1)