Table 2. Basic descriptive statistics for the primary analyses.
| Dataset | Total loci | Significant loci | Critical threshold | Significant GENES |
|---|---|---|---|---|
| MegaMUGA | 25,332 | 162a | P < 0.00526 (5% FWER) | 174b |
| Whole-Genome SNPs | 5,932,124 | 84 | P < 0.001 (Local Maximum) | 27 |
| Haplotypes | 16,901 | 102c (28 regions) | P < 0.00526 (See text) | 154b |
| All HR Fixed, All C Polymorphic | 5,932,124 | 2562 (46 regions) | See text | 135b |
a
In Xu and Garland (2017), 152 SNPs were identified as statistically significant with a single model and the MIVQUE procedure. after use of a permutation procedure to control the family-wise Type I error rate (FWER) at 5% (P < 0.00343).
b
These are not genes that SNPs fell into. These are genes close to significant SNPs or haplotypes.
c
From 28 closely linked groups.