Table 4. Model preference by data set, test, and allele counts.
| Model | MegaMUGAa | WGSa | Hap 2-alleleb | Hap 3-alleleb |
|---|---|---|---|---|
| Full | 9875 (39.0%) | 2,441,601 (41.2%) | 4512 (40.9%) | 5510 (46.9%) |
| SepVarLine | 3105 (12.3%) | 504,946 (8.5%) | 1052 (9.5%) | 1583 (13.5%) |
| SepVarInd | 2983 (11.8%) | 716,265 (12.1%) | 726 (6.6%) | 748 (6.4%) |
| Simple | 8654 (34.2%) | 2,186,803 (36.9%) | 4594 (41.6%) | 3615 (30.8%) |
| # with no within-line variance | 715 (2.8%) | 82,533 (1.4%) | 148 (1.3%) | 282 (2.4%) |
a
Number of SNPs whose lowest AICc match the indicated model.
b
Number of haplotype blocks whose lowest AICc match the indicated model (one for each dummy variable for 3-allele blocks).