Table 2.
Bacterial genera in colon differing in abundance between pigs under low (LSC) and high (HSC) sanitary conditions.
| Family | Genus | p-value | FDRa | HSCb | LSCb | FCc HSC/LSC |
|---|---|---|---|---|---|---|
| Veillonellaceae | Megasphaera | 3.0E-03 | 1.4E-02 | 1.93 | 1.15 | 1.68 |
| Bifidobacteriaceae | Bifidobacterium | 3.5E-06 | 3.8E-05 | 0.15 | 0.11 | 1.42 |
| Rikenellaceae | 2.5E-05 | 1.9E-04 | 0.02 | 0.02 | 1.26 | |
| Ruminococcaceae | Oscillospira | 6.4E-03 | 2.7E-02 | 2.70 | 2.67 | 1.01 |
| WCHB1.25 | 8.1E-04 | 4.9E-03 | 0.01 | 0.01 | 0.97 | |
| Lachnospiraceae | 7.4E-06 | 7.2E-05 | 5.07 | 5.54 | 0.92 | |
| Porphyromonadaceae | Paludibacter | 1.8E-07 | 3.8E-06 | 0.03 | 0.04 | 0.79 |
| Helicobacteraceae | Helicobacter | 9.9E-07 | 1.5E-05 | 0.01 | 0.01 | 0.77 |
| Helicobacteraceae | Flexispira | 1.9E-06 | 2.3E-05 | 0.02 | 0.02 | 0.77 |
| Lachnospiraceae | Lachnospira | 2.6E-03 | 1.3E-02 | 0.36 | 0.47 | 0.75 |
| Erysipelotrichaceae | p.75.a5 | 6.0E-08 | 3.8E-06 | 0.08 | 0.11 | 0.73 |
| Tissierellaceae | 1.2E-02 | 4.4E-02 | 0.36 | 0.50 | 0.71 | |
| Alphaproteobacteriad | 3.7E-03 | 1.7E-02 | 0.06 | 0.08 | 0.71 | |
| Veillonellaceae | 1.7E-07 | 3.8E-06 | 0.06 | 0.09 | 0.68 | |
| Veillonellaceae | Anaerovibrio | 4.7E-08 | 3.8E-06 | 0.08 | 0.12 | 0.63 |
| Lachnospiraceae | Shuttleworthia | 1.4E-07 | 3.8E-06 | 0.72 | 1.24 | 0.58 |
| Sphaerochaetaceae | Sphaerochaeta | 8.7E-04 | 5.1E-03 | 0.12 | 0.20 | 0.58 |
| Lachnospiraceae | Butyrivibrio | 1.7E-07 | 3.8E-06 | 0.06 | 0.11 | 0.56 |
| Anaeroplasmataceae | Anaeroplasma | 5.7E-03 | 2.5E-02 | 0.01 | 0.01 | 0.54 |
| BS11 | 7.9E-03 | 3.2E-02 | 0.01 | 0.01 | 0.54 | |
| Veillonellaceae | Acidaminococcus | 6.6E-08 | 3.8E-06 | 0.08 | 0.18 | 0.45 |
| Veillonellaceae | Dialister | 8.8E-08 | 3.8E-06 | 0.22 | 0.51 | 0.43 |
| Deltaproteobacteriad | 2.7E-07 | 5.3E-06 | 0.05 | 0.11 | 0.39 | |
| Elusimicrobiaceae | 6.2E-06 | 6.3E-05 | 0.01 | 0.02 | 0.37 | |
| Fibrobacteraceae | Fibrobacter | 1.8E-07 | 3.8E-06 | 0.01 | 0.04 | 0.37 |
| RF3d | 9.5E-03 | 3.8E-02 | 0.01 | 0.02 | 0.28 | |
| WPS.2e | 2.0E-06 | 2.3E-05 | 0.02 | 0.07 | 0.25 | |
| RF16 | 6.6E-07 | 1.1E-05 | 0.02 | 0.08 | 0.19 | |
| Succinivibrionaceae | Succinivibrio | 1.6E-03 | 8.7E-03 | 0.14 | 0.78 | 0.18 |
| Mogibacteriaceae | Mogibacterium | 1.8E-05 | 1.5E-04 | 0.01 | 0.08 | 0.18 |
| Deferribacteraceae | Mucispirillum | 3.5E-07 | 6.1E-06 | 0.03 | 0.18 | 0.17 |
| Betaproteobacteriad | 5.2E-04 | 3.5E-03 | 0.00 | 0.09 | 0.04 | |
| TA18d | 1.9E-03 | 9.8E-03 | 0.00 | 0.01 | 0.03 | |
| Brachyspiraceae | Brachyspira | 8.1E-04 | 4.9E-03 | 0.00 | 0.04 | 0.02 |
a
False discovery rate (FDR).
b
Low sanitary condition (LSC) and high sanitary condition (HSC) in relative intensities (i.e., signal intensities).
c
Fold change (FC).
d
This bacterial group could only be classified on Class level.
e
This bacterial group could only be classified on Phylum level.
The data are ordered for decreasing fold change.