| Resource | URL | Ref. |
|---|---|---|
| Functional annotations | ||
| Gene Ontology | http://geneontology.org/ | 167 |
| UniProt | https://www.uniprot.org/ | 168 |
| KEGG | https://www.genome.jp/kegg/ | 169 |
| Orthologues | ||
| OrthoDB | https://www.orthodb.org/ | 170 |
| gProfiler | https://biit.cs.ut.ee/gprofiler/orth | 171 |
| Databases of protein–protein interactions | ||
| The Human Protein Atlas | https://www.proteinatlas.org/ | 172 |
| STRING | https://string-db.org/ | 173 |
| BioGRID | https://thebiogrid.org/ | 174 |
| PICKLE | http://www.pickle.gr | 175 |
| APID | http://apid.dep.usal.es | 176 |
| IntAct | https://www.ebi.ac.uk/intact | 177 |
| Pathway Commons | http://www.pathwaycommons.org/ | 178 |
| Ligand–receptor interactions | ||
| IUPHAR/BPS Guide to Pharmacology | https://www.guidetopharmacology.org/ | 179 |
| Resources for cell–cell interactions from the Bader laboratory | http://baderlab.org/CellCellInteractions | 32 |
| Compendium of ligand–receptor pairs in the literature | https://github.com/LewisLabUCSD/Ligand-Receptor-Pairs | 10.1038/s41576-020-00292-x |