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. 2020 Sep 4;19:303. doi: 10.1186/s12936-020-03366-7

Table 2.

Genetic polymorphism and tests of neutrality in the N-terminal and C-terminal non-repeat regions of global VK210 variants

Region Country n K S Eta H Hd ± SD π ± SD dN-dS Tajima’s DP value Fu and Li’s DP value Fu and Li’s FP value
N-terminal Myanmar 143 0.098 5 6 7 0.096 ± 0.034 0.0024 ± 0.0009 0.0008 − 1.9359c − 3.9086b − 3.8409b
Cambodia 31 0.125 1 1 2 0.125 ± 0.077 0.0030 ± 0.0018 0.0039 − 0.7737a 0.5907a 0.2450a
India 79 1.972 23 28 28 0.661 ± 0.063 0.0470 ± 0.0074 − 0.0909 − 2.0261c − 1.3952a − 1.9514e
Iran 39 0 0 0 1 0 0 0 0 0 0
South Korea 39 0.051 1 1 2 0.051 ± 0.048 0.0012 ± 0.0011 0.0016 − 1.1264a − 1.7662a − 1.8293a
Brazil 41 0.049 1 1 2 0.049 ± 0.046 0.0012 ± 0.0011 − 0.0059 − 1.1219a − 1.7816a − 1.8406a
Mexico 11 0 0 0 1 0 0 0 0 0 0
Sudan 30 0 0 0 1 0 0 0 0 0 0
Vanuatu 21 0 0 0 1 0 0 0 0 0 0
C-terminal Myanmar 143 0.209 10 11 11 0.186 ± 0.044 0.0035 ± 0.0009 − 0.0035 − 2.2251d − 3.5089b − 3.6329b
Cambodia 31 0 0 0 1 0 0 0 0 0 0
India 79 0.276 8 9 6 0.123 ± 0.051 0.0043 ± 0.0020 − 0.0149 − 2.1953d − 4.4419b − 4.3524b
Iran 39 0 0 0 1 0 0 0 0 0 0
South Korea 39 0.103 2 2 3 0.101 ± 0.065 0.0008 ± 0.0005 − 0.0037 − 1.4889a − 2.4148e − 2.4864e
Brazil 41 0 0 0 1 0 0 0 0 0 0
Mexico 11 0 0 0 1 0 0 0 0 0 0
Sudan 30 0.067 1 1 2 0.067 ± 0.061 0.0009 ± 0.0008 − 0.0041 − 1.1470a − 1.6821a − 1.7655a
Vanuatu 21 0 0 0 1 0 0 0 0 0 0

n number of analysed sequences, K avarage number of nucleotide differences, S number of segregating sites, Eta total number of mutations, H number of haplotypes, Hd haplotype diversity, π observed average pairwise nucleotide diversity, SD standard deviation, dN rate of non-synonymous mutations, dS rate of synonymous mutations

aP > 0.1

bP < 0.02

cP < 0.05

dP < 0.01

e0.05 < P < 0.1