Table 1.

A brief description of each model file/folder in BioMASS.

Name	Content
name2idx/	Names of model parameters and species
set_model.py	Differential equations, parameters and initial conditions
observable.py	Observables, simulations and experimental data
viz.py	Plotting options for customizing figure properties
set_serach_param.py	Model parameters to optimize and search region
fitness.py	An objective function to be minimized
reaction_network.py	Reaction indices grouped according to biological processes