Bacterial and Virus Strains |
|
E. coli BL21 DE3 |
Sigma Aldrich |
69450-M |
|
Chemicals, Peptides, and Recombinant Proteins
|
|
Horse Spleen apoferritin |
Sigma Aldrich |
A3660 |
E. coli ribosome |
New England Biolabs |
P0763S |
IPTG |
Sigma Aldrich |
367-93-1 |
Protease inhibitor cocktail |
Calbiochem |
539-134 |
Ni-NTA affinity Resin |
Generon |
NB-45-00042 |
10kDa spin concentrator |
Vivaspin (Sartorious) |
VS0102 |
16/600 Superdex 200 gel filtration column |
GE Healthcare |
28-9893-35 |
Quantifoil 300 mesh CuR 1.2/1.3 grid
|
Agar Scientific |
AGS143-2 |
|
Deposited Data |
|
Ribosome 30S (13ms) |
From this study |
EMDB-10871 |
Ribosome 30S (54ms) |
From this study |
EMDB-10872 |
Ribosome 30S (200ms) |
From this study |
EMDB-10873 |
Ribosome 30S (blot) |
From this study |
EMDB-10874 |
Ribosome 50S (13ms) |
From this study |
EMDB-10875 |
Ribosome 50S (54ms) |
From this study |
EMDB-10876 |
Ribosome 50S (200ms) |
From this study |
EMDB-10877 |
Ribosome 50S (blot) |
From this study |
EMDB-10878 |
Ribosome 70S (13ms) |
From this study |
EMDB-10879 |
Ribosome 70S (54ms) |
From this study |
EMDB-10880 |
Ribosome 70S (200ms) |
From this study |
EMDB-10881 |
Ribosome 70S (blot) |
From this study |
EMDB-10882 |
HSPD1 (6ms) |
From this study |
EMDB-10883 |
HSPD1 (50ms) |
From this study |
EMDB-10884 |
HSPD1 (54ms) |
From this study |
EMDB-10885 |
HSPD1 (blot) |
From this study |
EMDB-10886 |
|
Recombinant DNA |
|
HSPD1 plasmid |
Dr. Jason Gestwicki & Dr. Hao Shao |
N/A |
|
Software and Algorithms |
|
MotionCor2 |
Zheng et al., 2017 |
https://emcore.ucsf.edu/ucsf-motioncor2 |
Imod |
Mastronarde, 1997; Kremer et al., 1996
|
https://bio3d.colorado.edu/imod/ |
EMAN2 |
Tang et al., 2007 |
https://blake.bcm.edu/emanwiki/EMAN2 |
RELION 3 |
Zivanov et al., 2018 |
https://www3.mrc-lmb.cam.ac.uk/relion/index.php?title=Main_Page |
GCTF |
Zhang, 2016 |
https://www2.mrc-lmb.cam.ac.uk/research/locally-developed-software/zhang-software/#gctf |
crYOLO |
Wagner et al., 2019 |
http://sphire.mpg.de/wiki/doku.php?id=pipeline:window:cryolo |
ChimeraX |
Goddard et al., 2018 |
https://www.cgl.ucsf.edu/chimerax/ |
Mollweide orientation plot |
Naydenova and Russo, 2017 |
https://www.mrc-lmb.cam.ac.uk/crusso/cryoEF/downloads.html |
|
Other |
|
Vitrobot Mark IV |
Thermo Fisher Scientific |
N/A |
chameleon |
SPT Labtech |
N/A |
TED |
Kontziampasis et al., 2019 |
N/A |