Skip to main content
. 2020 Nov 3;33(5):108328. doi: 10.1016/j.celrep.2020.108328
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti CD4 AF700 Rat monoclonal RM4-4 BioLegend Cat# 116022; RRID: AB_2715957
Anti CD4 BUV737 Rat monoclonal GK1.5 BDBiosciences Cat# 564298; RRID: AB_2738734
Anti TCRVβ 8.1/8.2 PerCP-eFluor710 Rat monoclonal KJ16-133 ThermoFisher Cat# 46-5813-82; RRID: AB_10549113
Anti TCRVβ 8.1/8.2 BUV395 Rat monoclonal MR5-2 BDBiosciences Cat# 744335; RRID: AB_2742163
Anti TCRβ AF700 Armenian Hamster monoclonal H57-597 BioLegend Cat# 109223; RRID: AB_109223
Anti CD69 APC Armenian Hamster monoclonal H1.2F3 BioLegend Cat# 104513; RRID: AB_492844
Anti CD8 AF700 Rat monoclonal 53-6.7 BioLegend Cat# 100729; RRID: AB_493702
Anti CD8 BUV395 Rat monoclonal 53-6.7 BDBiosciences Cat# 563786; RRID: AB_2732919
Anti TCR Vα2 PerCP/Cyanine5.5 Rat monoclonal B20.1 BioLegend Cat# 127813; RRID: AB_1186118
Anti TCR Vβ5.1/5.2 APC Mouse monoclonal MR9-4 BioLegend Cat# 139505; RRID: AB_10897800
Anti B220 PerCP-Cy5.5 Rat monoclonal RA3-6B2 BDBiosciences Cat# 561101; RRID: AB_10565970
Anti CD43 Biotin Rat monoclonal S7 BDBiosciences Cat# 553269; RRID: AB_2255226
Anti IgM PE-Cy7 Rat monoclonal RMM-1 BioLegend Cat# 406513; RRID AB_10640069
Anti IgD APC Rat monoclonal 11-26C Invitrogen Cat# 17-5993-82; RRID: AB_10598660
Anti CD21 APC Rat monoclonal 7G6 BDBiosciences Cat# 561770; RRID: AB_10892818
Anti CD23 PE-Cy7 Rat monoclonal B3B4 ThermoFisher Cat# 25-0232-82; RRID: AB_469604
Anti CD25 PerCP/Cy5.5 Rat monoclonal PC61 BioLegend Cat# 102029; RRID: AB_893291
Anti CD19 BUV737 Rat monoclonal 1D3 BDBiosciences Cat# 564296; RRID: AB_2716855
Anti CD3ε Armenian Hamster monoclonal 145-2C11 BioLegend Cat# 100301; RRID: AB_312666

Chemicals, Peptides, and Recombinant Proteins

Streptavidin BV711 BioLegend Cat# 405241
MBP Ac1-9[4Y] peptide AcASQYRPSQR GL Biochem Shanghai Custom product
N4 OVA 257-264 SIINFEKL peptide GL Biochem Shanghai Cat# 181660
Q4 OVA 257-264 SIIQFEKL peptide GL Biochem Shanghai Cat# 151560
V4 OVA 257-264 SIIVFEKL peptide GL Biochem Shanghai Cat# 151561
Cyclosporin A Cell Guidance Systems Cat# SM43; CAS: 59865-13-3
FK506 (Tacrolimus) Cayman Chemical Cat# 10007965; CAS: 59865-13-3
PD 0325901 Cayman Chemical Cat# 13034; CAS: 391210-10-9
DMSO Sigma Aldrich Cat# D2650; CAS: 67-68-5
PP2 Sigma Aldrich Cat# P0042; CAS: 172889-27-9

Critical Commercial Assays

RNeasy mini kit QIAGEN Cat# 74104
Invitrogen Superscript IV Reverse Transcriptase ThermoFisher Cat# 18090050
Invitrogen Random hexamers ThermoFisher Cat# N8080127
Applied Biosystems SYBR green power up master mix ThermoFisher Cat# A25752
eFluor-780 fixable viability dye eBioscience Cat# 65-0865-14
MoJo Sort nanobeads: CD8 T Cell Isolation Kit BioLegend Cat# 480035
MoJo Sort nanobeads: naive CD4 T Cell Isolation Kit BioLegend Cat# 480039

Deposited Data

RNA-seq of CA-RIT-NFAT1 CD8 T cells, NFAT1 ChIP-seq of WT and NFAT−/− CD8 T cells Martinez et al., 2015 GEO: GSE64409

Experimental Models: Organisms/Strains

Mouse: Nr4a3-Tocky founder line 323 Bending et al., 2018b; Obtained from Dr. Masahiro Ono from Imperial College London under MTA PMID: 29941474
Mouse:Tg4-H2U Liu et al., 1995; Provided by Prof. David Wraith University of Birmingham PMID: 7584132
Mouse: IL-10-GFP Tiger Kamanaka et al., 2006; Provided by Prof. David Wraith University of Birmingham PMID: 17137799
Mouse: Great-Smart17A Price et al., 2012; Obtained from Prof. Richard Locksley from University of California, San Francisco under MTA PMID: 22768117
Mouse: Nr4a1/Nur77-GFP Moran et al., 2011; Provided by Prof. Graham Anderson University of Birmingham PMID: 21606508
Mouse: OTI Charles River Laboratories Strain Code: 642

Oligonucleotides

Hprt for: AGCCTAAGATGAGCGCAAGT rev: TTACTAGGCAGATGGCCACA Bending et al., 2018a PMID: 29991564
Nr4a1 for: TGTGAGGGCTGCAAGGGCTTC rev: AAGCGGCAGAACTGGCAGCGG Sekiya et al., 2013 PMID: 23334790
Nr4a2 for: CTGTGCGCTGTTTGCGGTGAC rev: CGGCGCTTGTCCACTGGGCAG Sekiya et al., 2013 PMID: 23334790
Nr4a3 for: AGGGCTTCTTCAAGAGAACGG rev: CCATCCCGACACTGAGACAC This paper, Designed using NCBI Primer Blast N/A

Software and Algorithms

GraphPad Prism 7 and 8 https://www.graphpad.com/scientific-software/prism/
FlowJo v10.5.3 https://www.flowjo.com/solutions/flowjo
CyVerse Discovery Environment https://cyverse.org/discovery-environment
UCSC genome browser https://genome.ucsc.edu