Table 1. Genome data for Sciurus carolinensis mSciCar1.
| Project accession data | |
|---|---|
| Assembly identifier | mSciCar1 |
| Species | Sciurus carolinensis |
| Specimen | NHMUK ZD 2019.214 |
| NCBI taxonomy ID | 30640 |
| BioProject | PRJEB35386 |
| Biosample ID | SAMEA994726 |
| Isolate information | Wild isolate; male |
| Raw data accessions | |
| PacificBiosciences
SEQUEL I |
ERR3313242-ERR3313245,
ERR3313247-ERR3313255, ERR3313329, ERR3313331, ERR3313332, ERR3313342- ERR3313348 |
| 10X Genomics Illumina | ERR3316153-ERR3316156,
ERR3316173-ERR3316176 |
| Hi-C Illumina | ERR3312499-ERR3312500,
ERR3850937 |
| Genome assembly | |
| Assembly accession | GCA_902686445.1 |
| Accession of alternate
haplotype |
GCA_902685475.1 |
| Span (Mb) | 2,815,397,268 |
| Number of contigs | 2576 |
| Contig N50 length (Mb) | 13.98 |
| Number of scaffolds | 752 |
| Scaffold N50 length (Mb) | 148.23 |
| Longest scaffold (Mb) | 208.99 |
| BUSCO * genome score | C:93.7%[S:92.3%,D:1.4%],F:2.8%,M
:3.5%,n:4104 |
* BUSCO scores based on the mammalia_odb9 BUSCO set using v3.0.2. C= complete [S= single copy, D=duplicated], F=fragmented, M=missing, n=number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/mSciCar1_1/dataset/mSciCar1_1/busco.