Table 1.
Variant | Zygosity | dbSNP154 rs number | Allele frequencies | Bioinformatic predictions | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleotide change | Amino acid change | 1,000 Genomes Project | ExAC | gnomAD | MutationTaster | SIFT | PROVEAN | PANTHER | PolyPhen-2 | ||
c.537T>A | p.Asp179Glu | Heterozygote | rs28362519 | 2 × 10−3 | 6.802 × 10−4 | 6.824 × 10−4 | Disease causing | Tolerated | Neutral | Probably benign | Benign |
dbSNP154, Single Nucleotide Polymorphism Database version 154; rs, Reference SNP; ExAC, Exome Aggregation Consortium; gnomAD, Genome Aggregation Database; SIFT, Sorting Intolerant from Tolerant; PROVEAN, Protein Variation Effect Analyzer; PANTHER, Protein Analysis Through Evolutionary Relationships; PolyPhen-2, Polymorphism Phenotyping version 2.