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Prediction accuracy using different training populations with RKHS. Green bars indicate results using the all-marker set [18,663 single-nucleotide polymorphisms (SNPs)]; orange bars indicate results using the 2nd marker set (9,282 SNPs). Training populations: AC, C. annuum complex (302 lines); AO, C. annuum only (229 lines); CF, the rest of the lines except C. annuum population (C. chinense and C. frutescens; 73 lines).
