Table 2.

Marker distribution and linkage disequilibrium (LD) cutoff for each marker set.

Marker set	Number of markers	LD cutoff	Median	Mean ± SD	Maximum
All SNPs	18,663		0.119	0.343 ± 0.392	1.000
2nd set	9,282	0.80	0.027	0.137 ± 0.207	0.800
3rd set	4,896	0.4	0.013	0.067 ± 0.102	0.398
4th set	2,758	0.2	0.005	0.029 ± 0.048	0.196
5th set	1,391	0.1	0.003	0.011 ± 0.020	0.098
6th set	711	0.05	0.001	0.006 ± 0.010	0.044