Table 1.
Statistics of RNA-seq reads.
| Samples | Total reads | Uniquely mapped reads | Multiply mapped reads |
|---|---|---|---|
| XRI-1 | 59,395,708 | 50,385,642 (84.83%) | 1,834,255 (3.09%) |
| XRI-2 | 71,452,986 | 60,635,913 (84.86%) | 1,366,235 (1.91%) |
| XRM-1 | 54,530,318 | 47,518,520 (87.14%) | 922,469 (1.69%) |
| XRM-2 | 59,370,030 | 52,035,796 (87.65%) | 1,343,567 (2.26%) |
| XRM-3 | 62,654,504 | 52,749,774 (84.19%) | 1,346,979 (2.15%) |
| WTI-1 | 52,052,314 | 45,482,023 (87.38%) | 1,326,379 (2.55%) |
| WTI-2 | 60,142,368 | 52,009,381 (86.48%) | 1,723,060 (2.86%) |
| WTI-3 | 58,057,590 | 50,885,173 (87.65%) | 1,148,390 (1.98%) |
| WTM-1 | 57,207,506 | 49,886,919 (87.20%) | 1,121,745 (1.96%) |
| WTM-2 | 51,845,292 | 45,544,161 (87.85%) | 1,018,135 (1.96%) |
| WTM-3 | 53,018,932 | 46,897,761 (88.45%) | 891,019 (1.68%) |
Reads were mapped to the Nipponbare reference genome.
XRI M-4 inocula, XRM M-4 mock-inocluated, WTI MH86 inoculated, WTM MH86 mock-inoculated.