Table 2.
CHR | SNP | BP | RA | NRA | RAF_Case | RAF_Ctrl | P_allelic | P_dom | P_rec | Pmin | OR | L95 | U95 | Gene | rel.loci |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cyclophosphamide | |||||||||||||||
16 | rs2519974a | 22889186 | T | C | 0.503 | 0.381 | 2.52E‐04 | 4.35E‐06 | 2.77E‐01 | 4.35E‐06 | 1.647 | 1.264 | 2.146 | HS3ST2 | 0 |
1 | rs10922438a | 198469162 | T | C | 0.214 | 0.106 | 6.01E‐06 | 1.71E‐05 | 7.10E‐02 | 6.01E‐06 | 2.301 | 1.608 | 3.293 | ATP6V1G3 | 23190 |
19 | rs3745571a | 6475613 | T | C | 0.778 | 0.670 | 4.05E‐04 | 7.72E‐06 | 1.00E+00 | 7.72E‐06 | 1.730 | 1.276 | 2.345 | DENND1C | 0 |
All platinum‐based drugs | |||||||||||||||
15 | rs4886670a | 75449674 | A | C | 0.320 | 0.227 | 9.86E‐07 | 1.43E‐05 | 8.14E‐04 | 9.86E‐07 | 1.605 | 1.330 | 1.937 | RPL36AP45 | 29318 |
19 | rs33428a | 30937843 | G | A | 0.481 | 0.403 | 2.71E‐04 | 2.78E‐06 | 3.11E‐01 | 2.78E‐06 | 1.375 | 1.160 | 1.629 | ZNF536 | 0 |
14 | rs12589282a | 22937656 | G | T | 0.535 | 0.437 | 6.30E‐06 | 5.42E‐03 | 4.11E‐06 | 4.11E‐06 | 1.480 | 1.250 | 1.752 | TRA@ | 0 |
3 | rs3845905a | 66525963 | G | A | 0.915 | 0.850 | 4.12E‐06 | 7.45E‐05 | 3.65E‐04 | 4.12E‐06 | 1.894 | 1.433 | 2.503 | LRIG1 | 0 |
5 | rs1895302a | 169542600 | C | T | 0.551 | 0.478 | 6.95E‐04 | 7.41E‐06 | 4.11E‐01 | 7.41E‐06 | 1.340 | 1.132 | 1.587 | FOXI1 | 5871 |
1 | rs16825455a | 21837755 | T | C | 0.686 | 0.605 | 8.85E‐05 | 8.62E‐06 | 1.90E‐01 | 8.62E‐06 | 1.425 | 1.193 | 1.702 | ALPL | 0 |
Cisplatin | |||||||||||||||
7 | rs10253216a | 16861849 | T | C | 0.565 | 0.468 | 2.18E‐03 | 1.68E‐07 | 1.00E+00 | 1.68E‐07 | 1.478 | 1.155 | 1.891 | AGR2 | −17111 |
4 | rs11944965a | 63424089 | T | C | 0.807 | 0.678 | 3.45E‐06 | 1.68E‐06 | 6.65E‐02 | 1.68E‐06 | 1.986 | 1.475 | 2.676 | LOC644534 | 47600 |
7 | rs7797977a | 16862235 | C | A | 0.668 | 0.580 | 4.06E‐03 | 5.23E‐01 | 2.17E‐06 | 2.17E‐06 | 1.457 | 1.127 | 1.883 | AGR2 | −17497 |
18 | rs2406342a | 74488280 | T | G | 0.605 | 0.475 | 3.59E‐05 | 2.48E‐06 | 6.71E‐02 | 2.48E‐06 | 1.697 | 1.323 | 2.177 | ZNF236 | −47836 |
20 | rs6077251a | 7752366 | T | C | 0.271 | 0.153 | 2.50E‐06 | 3.64E‐06 | 3.06E‐02 | 2.50E‐06 | 2.065 | 1.537 | 2.773 | SFRS13AP2 | 59982 |
8 | rs11774576a | 27740417 | A | G | 0.702 | 0.581 | 6.78E‐05 | 2.82E‐06 | 2.62E‐01 | 2.82E‐06 | 1.699 | 1.307 | 2.208 | SCARA5 | 0 |
11 | rs4627050a | 18822037 | G | A | 0.781 | 0.649 | 4.43E‐06 | 9.01E‐06 | 2.17E‐02 | 4.43E‐06 | 1.932 | 1.452 | 2.572 | PTPN5 | −8648 |
1 | rs12142335a | 108302922 | A | G | 0.040 | 0.004 | 9.91E‐06 | 8.45E‐06 | 1.00E+00 | 8.45E‐06 | 9.713 | 3.175 | 29.710 | VAV3 | 0 |
Carboplatin | |||||||||||||||
15 | rs11071200a | 55950082 | T | G | 0.060 | 0.008 | 1.25E‐06 | 8.51E‐07 | 1.00E+00 | 8.51E‐07 | 8.241 | 2.888 | 23.520 | PRTG | 0 |
5 | rs3822735a | 35799994 | G | A | 0.862 | 0.752 | 7.24E‐06 | 1.68E‐06 | 3.50E‐01 | 1.68E‐06 | 2.062 | 1.500 | 2.834 | SPEF2 | 0 |
3 | rs1623879a | 58027197 | G | A | 0.441 | 0.321 | 7.69E‐05 | 1.89E‐02 | 3.75E‐06 | 3.75E‐06 | 1.669 | 1.297 | 2.148 | FLNB | 0 |
15 | rs936229a | 75132319 | G | A | 0.713 | 0.595 | 7.27E‐05 | 4.41E‐06 | 3.01E‐01 | 4.41E‐06 | 1.685 | 1.302 | 2.180 | ULK3 | 0 |
13 | rs7989332a | 21050575 | G | T | 0.853 | 0.738 | 5.47E‐06 | 1.16E‐04 | 1.74E‐03 | 5.47E‐06 | 2.056 | 1.507 | 2.806 | CRYL1 | 0 |
3 | rs3845905a | 66525963 | G | A | 0.921 | 0.828 | 5.99E‐06 | 2.20E‐05 | 1.50E‐02 | 5.99E‐06 | 2.433 | 1.645 | 3.598 | LRIG1 | 0 |
8 | rs1714746a | 4105147 | G | A | 0.554 | 0.435 | 1.59E‐04 | 6.63E‐02 | 7.44E‐06 | 7.44E‐06 | 1.610 | 1.261 | 2.056 | CSMD1 | 0 |
16 | rs12446319a | 81774798 | A | G | 0.253 | 0.143 | 8.97E‐06 | 1.27E‐04 | 3.16E‐04 | 8.97E‐06 | 2.026 | 1.480 | 2.774 | CMIP | 29431 |
1 | rs1277203a | 109392837 | A | G | 0.730 | 0.626 | 3.50E‐04 | 3.51E‐02 | 9.38E‐06 | 9.38E‐06 | 1.615 | 1.243 | 2.098 | AKNAD1 | 0 |
All anthracycline‐based drugs | |||||||||||||||
5 | rs10040979a | 158424391 | G | A | 0.701 | 0.618 | 4.68E‐03 | 5.35E‐01 | 4.60E‐07 | 4.60E‐07 | 1.452 | 1.120 | 1.883 | EBF1 | 0 |
2 | rs12615435a | 200638509 | T | G | 0.883 | 0.773 | 3.95E‐06 | 4.09E‐06 | 9.17E‐02 | 3.95E‐06 | 2.214 | 1.555 | 3.154 | LOC348751 | 0 |
5 | rs7720283a | 158459721 | C | T | 0.775 | 0.706 | 1.29E‐02 | 3.37E‐01 | 4.15E‐06 | 4.15E‐06 | 1.431 | 1.078 | 1.898 | EBF1 | 0 |
1 | rs1367448a | 68633924 | C | T | 0.633 | 0.526 | 5.02E‐04 | 5.32E‐06 | 5.12E‐01 | 5.32E‐06 | 1.554 | 1.212 | 1.993 | LOC100289178 | 0 |
6 | rs2505059a | 98495952 | G | A | 0.538 | 0.398 | 5.41E‐06 | 2.29E‐04 | 2.04E‐04 | 5.41E‐06 | 1.765 | 1.383 | 2.252 | MIR2113 | 23455 |
12 | rs4149639a | 6442001 | C | T | 0.120 | 0.047 | 7.39E‐06 | 1.52E‐05 | 8.16E‐02 | 7.39E‐06 | 2.763 | 1.781 | 4.287 | TNFRSF1A | 0 |
19 | rs1654260a | 20329111 | A | G | 0.625 | 0.488 | 8.49E‐06 | 3.03E‐03 | 2.18E‐05 | 8.49E‐06 | 1.749 | 1.365 | 2.240 | LOC100421704 | −3576 |
Doxorubicin | |||||||||||||||
15 | rs11857176a | 78164706 | A | G | 0.657 | 0.515 | 1.74E‐02 | 1.00E+00 | 8.08E‐07 | 8.08E‐07 | 1.800 | 1.127 | 2.874 | LOC100302666 | −6274 |
2 | rs4380275a | 773278 | G | A | 0.392 | 0.152 | 4.99E‐06 | 1.54E‐05 | 2.05E‐02 | 4.99E‐06 | 3.604 | 2.041 | 6.365 | LOC339822 | 6559 |
11 | rs2512987a | 86414282 | T | C | 0.681 | 0.417 | 7.02E‐06 | 6.04E‐03 | 3.42E‐05 | 7.02E‐06 | 2.985 | 1.855 | 4.803 | ME3 | −30604 |
Epirubicin | |||||||||||||||
12 | rs4149639a | 6442001 | C | T | 0.163 | 0.042 | 2.89E‐07 | 8.31E‐07 | 3.32E‐02 | 2.89E‐07 | 4.443 | 2.571 | 7.677 | TNFRSF1A | 0 |
5 | rs2964475a | 5407814 | C | A | 0.615 | 0.415 | 4.13E‐06 | 3.95E‐04 | 1.10E‐04 | 4.13E‐06 | 2.248 | 1.592 | 3.174 | KIAA0947 | −14993 |
13 | rs1923834a | 28360487 | G | A | 0.916 | 0.770 | 9.40E‐06 | 4.61E‐06 | 3.33E‐01 | 4.61E‐06 | 3.236 | 1.823 | 5.744 | GSX1 | −6293 |
10 | rs908366a | 126144839 | A | G | 0.518 | 0.328 | 7.04E‐06 | 1.08E‐04 | 8.69E‐04 | 7.04E‐06 | 2.199 | 1.564 | 3.092 | LHPP | −5502 |
3 | rs1553091a | 187716886 | G | A | 0.452 | 0.358 | 2.65E‐02 | 8.04E‐01 | 7.46E‐06 | 7.46E‐06 | 1.480 | 1.053 | 2.080 | LOC100505844 | −22691 |
All antimetabolite drugs | |||||||||||||||
18 | rs7228133a | 4539085 | C | A | 0.733 | 0.686 | 2.26E‐02 | 6.64E‐01 | 1.70E‐06 | 1.70E‐06 | 1.255 | 1.034 | 1.522 | LOC284215 | 243085 |
21 | rs8127977a | 26826514 | A | G | 0.804 | 0.722 | 1.30E‐05 | 2.11E‐06 | 2.67E‐01 | 2.11E‐06 | 1.587 | 1.282 | 1.966 | NCRNA00158 | −22501 |
12 | rs894734a | 54319727 | G | A | 0.849 | 0.776 | 3.84E‐05 | 3.97E‐06 | 6.63E‐01 | 3.97E‐06 | 1.619 | 1.279 | 2.050 | HOXC13 | −12849 |
13 | rs9580312a | 22754093 | G | A | 0.480 | 0.409 | 1.35E‐03 | 8.09E‐06 | 6.25E‐01 | 8.09E‐06 | 1.330 | 1.120 | 1.581 | LOC100506622 | −30331 |
21 | rs2055011a | 19481354 | C | T | 0.184 | 0.143 | 1.12E‐02 | 2.12E‐01 | 8.82E‐06 | 8.82E‐06 | 1.347 | 1.075 | 1.686 | CHODL | −135796 |
12 | rs12582168a | 124894184 | C | T | 0.333 | 0.256 | 8.50E‐05 | 9.31E‐06 | 2.84E‐01 | 9.31E‐06 | 1.454 | 1.210 | 1.748 | NCOR2 | 0 |
5‐Fluorouracil | |||||||||||||||
7 | rs10488226a | 12713070 | A | C | 0.195 | 0.107 | 1.09E‐05 | 3.54E‐06 | 2.98E‐01 | 3.54E‐06 | 2.026 | 1.500 | 2.737 | LOC100505995 | −12175 |
2 | rs6740660a | 224943685 | G | A | 0.966 | 0.894 | 4.10E‐06 | 8.83E‐06 | 2.40E‐01 | 4.10E‐06 | 3.386 | 1.870 | 6.131 | SERPINE2 | −39649 |
4 | rs1567482a | 36026747 | G | A | 0.952 | 0.875 | 6.26E‐06 | 1.44E‐05 | 9.14E‐02 | 6.26E‐06 | 2.846 | 1.716 | 4.719 | LOC651644 | 39948 |
2 | rs6706693a | 192465598 | A | G | 0.328 | 0.219 | 1.62E‐05 | 2.12E‐03 | 9.45E‐06 | 9.45E‐06 | 1.743 | 1.362 | 2.232 | OBFC2A | −77200 |
Gemcitabine | |||||||||||||||
18 | rs9961113a | 75605399 | C | T | 0.625 | 0.403 | 1.43E‐06 | 3.83E‐04 | 3.73E‐05 | 1.43E‐06 | 2.473 | 1.706 | 3.584 | LOC100421527 | −260017 |
5 | rs2547917a | 58713680 | A | G | 0.350 | 0.212 | 9.06E‐04 | 8.79E‐02 | 3.33E‐06 | 3.33E‐06 | 1.997 | 1.345 | 2.965 | PDE4D | 0 |
15 | rs12900463a | 85415386 | C | T | 0.219 | 0.115 | 2.24E‐03 | 1.02E‐01 | 4.03E‐06 | 4.03E‐06 | 2.154 | 1.342 | 3.457 | ALPK3 | 0 |
22 | rs9609078a | 31153276 | T | C | 0.089 | 0.009 | 4.32E‐06 | 9.97E‐06 | 2.59E‐01 | 4.32E‐06 | 10.890 | 3.528 | 33.610 | OSBP2 | 0 |
5 | rs6863418a | 173625154 | A | G | 0.175 | 0.055 | 1.37E‐05 | 6.98E‐06 | 4.55E‐01 | 6.98E‐06 | 3.623 | 2.042 | 6.429 | HMP19 | 88972 |
20 | rs6037430a | 344079 | G | A | 0.894 | 0.730 | 9.74E‐06 | 1.75E‐05 | 7.92E‐02 | 9.74E‐06 | 3.109 | 1.805 | 5.359 | NRSN2 | 8567 |
All antimicrotubule drugs | |||||||||||||||
17 | rs11651483a | 12777402 | C | T | 0.729 | 0.665 | 1.69E‐03 | 2.60E‐01 | 3.37E‐07 | 3.37E‐07 | 1.357 | 1.120 | 1.643 | RICH2 | 0 |
6 | rs4235898a | 77266188 | A | G | 0.830 | 0.740 | 1.05E‐06 | 3.34E‐06 | 6.50E‐03 | 1.05E‐06 | 1.718 | 1.377 | 2.142 | LOC100131680 | −103976 |
13 | rs4771859a | 93088651 | G | A | 0.764 | 0.709 | 5.49E‐03 | 2.60E‐01 | 1.47E‐06 | 1.47E‐06 | 1.328 | 1.088 | 1.623 | GPC5 | 0 |
1 | rs12145418a | 216716320 | T | G | 0.334 | 0.274 | 3.04E‐03 | 3.17E‐01 | 2.35E‐06 | 2.35E‐06 | 1.331 | 1.104 | 1.604 | ESRRG | 0 |
6 | rs9386485a | 106329055 | T | C | 0.596 | 0.492 | 2.65E‐06 | 2.85E‐05 | 8.59E‐04 | 2.65E‐06 | 1.524 | 1.279 | 1.817 | PRDM1 | −205140 |
16 | rs12935229a | 77328895 | A | G | 0.249 | 0.182 | 1.83E‐04 | 2.23E‐02 | 4.40E‐06 | 4.40E‐06 | 1.495 | 1.214 | 1.840 | ADAMTS18 | 0 |
7 | rs6961860a | 17085321 | G | A | 0.557 | 0.495 | 5.33E‐03 | 8.87E‐01 | 4.67E‐06 | 4.67E‐06 | 1.283 | 1.078 | 1.527 | LOC100131425 | 156806 |
14 | rs12882718a | 86902054 | T | C | 0.737 | 0.643 | 5.91E‐06 | 5.55E‐06 | 2.03E‐02 | 5.55E‐06 | 1.555 | 1.283 | 1.884 | LOC100421119 | −42891 |
12 | rs1043763a | 122630909 | T | C | 0.668 | 0.574 | 1.36E‐05 | 6.51E‐06 | 3.10E‐02 | 6.51E‐06 | 1.496 | 1.248 | 1.795 | MLXIP | 1920 |
2 | rs4591358a | 196365890 | C | T | 0.302 | 0.215 | 6.60E‐06 | 6.89E‐04 | 1.89E‐04 | 6.60E‐06 | 1.578 | 1.297 | 1.920 | LOC391470 | 81627 |
14 | rs8022296a | 97987857 | G | A | 0.663 | 0.608 | 1.06E‐02 | 6.54E‐01 | 7.29E‐06 | 7.29E‐06 | 1.269 | 1.058 | 1.521 | LOC100129345 | 111127 |
4 | rs6817170a | 154374984 | G | A | 0.377 | 0.286 | 9.29E‐06 | 4.61E‐05 | 3.27E‐03 | 9.29E‐06 | 1.517 | 1.264 | 1.822 | KIAA0922 | −12514 |
Paclitaxel | |||||||||||||||
1 | rs922106a | 90025519 | T | G | 0.298 | 0.202 | 2.17E‐04 | 1.95E‐02 | 9.28E‐07 | 9.28E‐07 | 1.679 | 1.277 | 2.207 | LRRC8B | 0 |
6 | rs9386485a | 106329055 | T | C | 0.624 | 0.477 | 1.17E‐06 | 1.43E‐05 | 5.24E‐04 | 1.17E‐06 | 1.821 | 1.429 | 2.320 | PRDM1 | −205140 |
8 | rs2444896a | 99022009 | T | G | 0.727 | 0.603 | 1.58E‐05 | 2.43E‐06 | 7.41E‐02 | 2.43E‐06 | 1.754 | 1.355 | 2.269 | MATN2 | 0 |
2 | rs4666360a | 20335709 | C | T | 0.216 | 0.114 | 4.62E‐06 | 3.24E‐06 | 2.27E‐01 | 3.24E‐06 | 2.136 | 1.546 | 2.950 | RPS16P2 | 19625 |
9 | rs3138083a | 35648950 | A | G | 0.220 | 0.117 | 3.78E‐06 | 1.24E‐05 | 1.09E‐02 | 3.78E‐06 | 2.136 | 1.551 | 2.942 | SIT1 | 345 |
17 | rs3786094a | 9875205 | C | T | 0.528 | 0.422 | 5.30E‐04 | 1.80E‐01 | 5.83E‐06 | 5.83E‐06 | 1.531 | 1.206 | 1.944 | GAS7 | 0 |
15 | rs4886670a | 75449674 | A | C | 0.353 | 0.229 | 7.26E‐06 | 5.38E‐05 | 4.26E‐03 | 7.26E‐06 | 1.835 | 1.412 | 2.383 | RPL36AP45 | 29318 |
5 | rs792975a | 172271007 | T | C | 0.654 | 0.519 | 7.66E‐06 | 1.19E‐04 | 6.08E‐04 | 7.66E‐06 | 1.746 | 1.366 | 2.232 | ERGIC1 | 0 |
Docetaxel | |||||||||||||||
9 | rs3747851a | 124521260 | T | C | 0.337 | 0.176 | 5.61E‐07 | 1.12E‐05 | 5.63E‐04 | 5.61E‐07 | 2.377 | 1.693 | 3.339 | DAB2IP | 0 |
7 | rs4727963a | 122759980 | C | T | 0.772 | 0.618 | 7.99E‐06 | 1.04E‐06 | 1.69E‐01 | 1.04E‐06 | 2.094 | 1.505 | 2.914 | SLC13A1 | 0 |
14 | rs1756650a | 87741025 | G | A | 0.211 | 0.162 | 9.95E‐02 | 9.10E‐01 | 1.74E‐06 | 1.74E‐06 | 1.386 | 0.954 | 2.014 | GALC | 658333 |
13 | rs488248a | 106596719 | T | C | 0.918 | 0.795 | 3.29E‐06 | 3.23E‐05 | 1.17E‐02 | 3.29E‐06 | 2.896 | 1.802 | 4.655 | LOC728192 | −432192 |
6 | rs12660691a | 130008445 | A | C | 0.935 | 0.819 | 3.62E‐06 | 4.99E‐06 | 1.62E‐01 | 3.62E‐06 | 3.199 | 1.899 | 5.391 | ARHGAP18 | 0 |
18 | rs4553720a | 62170726 | T | C | 0.377 | 0.281 | 7.77E‐03 | 4.56E‐01 | 6.77E‐06 | 6.77E‐06 | 1.547 | 1.131 | 2.116 | LOC284294 | 79890 |
6 | rs2157460a | 130021128 | T | C | 0.932 | 0.820 | 7.07E‐06 | 1.07E‐05 | 1.62E‐01 | 7.07E‐06 | 3.013 | 1.806 | 5.025 | ARHGAP18 | 0 |
2 | rs837841a | 130034012 | T | G | 0.714 | 0.662 | 1.49E‐01 | 5.26E‐01 | 8.34E‐06 | 8.34E‐06 | 1.279 | 0.930 | 1.759 | LOC151121 | −33653 |
All topoisomerase inhibitors | |||||||||||||||
5 | rs10074959a | 104208013 | T | C | 0.321 | 0.237 | 3.23E‐02 | 8.08E‐01 | 1.13E‐06 | 1.13E‐06 | 1.524 | 1.048 | 2.217 | RAB9P1 | −227162 |
7 | rs1035147a | 12094966 | T | G | 0.981 | 0.877 | 4.01E‐06 | 4.75E‐06 | 5.56E‐01 | 4.01E‐06 | 7.294 | 2.587 | 20.559 | TMEM106B | −155882 |
1 | rs303386a | 99589379 | A | G | 0.585 | 0.444 | 1.10E‐03 | 4.30E‐06 | 3.88E‐01 | 4.30E‐06 | 1.766 | 1.256 | 2.483 | LOC100129620 | 0 |
14 | rs7494275a | 56231800 | C | A | 0.543 | 0.406 | 1.86E‐03 | 4.26E‐01 | 8.50E‐06 | 8.50E‐06 | 1.732 | 1.232 | 2.433 | RPL13AP3 | −1163 |
3 | rs480409a | 7010081 | G | A | 0.495 | 0.348 | 6.08E‐04 | 1.63E‐01 | 9.28E‐06 | 9.28E‐06 | 1.842 | 1.307 | 2.596 | GRM7 | 0 |
Camptothecin | |||||||||||||||
6 | rs17318866a | 3837198 | G | A | 0.966 | 0.790 | 1.47E‐06 | 1.78E‐06 | 1.91E‐01 | 1.47E‐06 | 7.559 | 2.689 | 21.263 | FAM50B | −12434 |
2 | rs17027130a | 41273631 | C | T | 0.644 | 0.387 | 2.54E‐06 | 8.03E‐04 | 3.91E‐05 | 2.54E‐06 | 2.865 | 1.844 | 4.452 | LOC729984 | −110074 |
1 | rs303386a | 99589379 | A | G | 0.627 | 0.429 | 3.34E‐04 | 3.61E‐06 | 1.06E‐01 | 3.61E‐06 | 2.238 | 1.448 | 3.460 | LOC100129620 | 0 |
Etoposide | |||||||||||||||
20 | rs6039763a | 10183517 | A | G | 0.370 | 0.090 | 1.27E‐05 | 1.54E‐06 | 4.61E‐01 | 1.54E‐06 | 5.966 | 2.502 | 14.230 | LOC100131208 | 0 |
1 | rs2506991a | 48098406 | G | A | 0.593 | 0.269 | 1.39E‐05 | 1.11E‐02 | 2.28E‐06 | 2.28E‐06 | 3.948 | 2.101 | 7.418 | LOC388630 | 127794 |
2 | rs12987465a | 49715021 | A | G | 0.593 | 0.359 | 1.87E‐03 | 6.26E‐01 | 6.61E‐06 | 6.61E‐06 | 2.597 | 1.424 | 4.737 | FSHR | –333355 |
7 | rs3095008a | 20255705 | T | C | 1.000 | 0.846 | 1.74E‐05 | 9.39E‐06 | 1.00E+00 | 9.39E‐06 | inf | N/A | N/A | MACC1 | 0 |
Paclitaxel + carboplatin | |||||||||||||||
12 | rs12310399a | 95490248 | A | G | 0.708 | 0.567 | 2.60E‐04 | 1.08E‐01 | 2.46E‐07 | 2.46E‐07 | 1.852 | 1.329 | 2.580 | FGD6 | 0 |
9 | rs10785877a | 137125501 | T | C | 0.833 | 0.660 | 7.38E‐07 | 1.54E‐05 | 1.98E‐04 | 7.38E‐07 | 2.580 | 1.766 | 3.769 | RXRA | ‐92815 |
19 | rs995834a | 28866596 | C | T | 0.580 | 0.425 | 1.28E‐04 | 1.20E‐06 | 1.51E‐01 | 1.20E‐06 | 1.871 | 1.364 | 2.566 | LOC100420587 | 307385 |
1 | rs922107a | 90022796 | G | A | 0.323 | 0.211 | 1.55E‐03 | 9.07E‐02 | 2.73E‐06 | 2.73E‐06 | 1.788 | 1.250 | 2.558 | LRRC8B | 0 |
7 | rs1425132a | 37562368 | T | C | 0.740 | 0.666 | 4.55E‐02 | 7.35E‐01 | 4.68E‐06 | 4.68E‐06 | 1.430 | 1.013 | 2.017 | LOC442668 | 62349 |
1 | rs6429703a | 15339960 | T | C | 0.200 | 0.078 | 8.40E‐06 | 2.59E‐05 | 5.61E‐02 | 8.40E‐06 | 2.942 | 1.802 | 4.804 | RP1‐21O18.1 | 0 |
SNPs used for weighted genetic risk score analyses. BP, SNP genomic location; CHR, chromosome; inf, infinity; L95, lower 95% confidence interval; N/A, not applicable; NRA, non‐risk allele; OR, odds ratio; P_allelic, P‐value from allelic model; P_dom, P‐value from dominant model; P_min, minimum P‐value among the three models; P_rec, P‐value from recessive model; RA, risk allele; RAF, risk allele frequency; rel.loci, distance of the SNP from the gene; U95, upper 95% confidence interval.