TABLE 1.
Distribution of genes involved in lipoic acid metabolism in representatives of Archaea
| Organism or E value parameter | Gene returned for indicated querya |
|||||
|---|---|---|---|---|---|---|
| Lipoyl synthase |
Lipoylation substrate |
|||||
| LipA, SSO3158 | LipS1, TK2109 | LipS2, TK2248 | PDC E2 N, SSO1529 | PDC E2 C, SSO1530 | GCS H-protein, TK0150 | |
| Archaeoglobus fulgidus DSM 4304 | ||||||
| Halorhabdus utahensis | ||||||
| Halanaeroarchaeum sulfurireducens | HLASF_0883 | HLASF_0883 | HLASF_1709 | |||
| Halobacterium salinarum NRC-1 | VNG_2216G | VNG_2219G | VNG_2219G | VNG_1605G | ||
| Haloferax volcanii | HVO_2957 | HVO_0666 HVO_2960 | HVO_2960 HVO_0666 | HVO_2403 | ||
| Haloplanus sp. CBA1112 | DU484_02100 | DU484_02085 | DU484_12585 DU484_02085 | DU484_16075 | ||
| Halopiger xanaduensis | Halxa_1123 | Halxa_1119 | Halxa_1119 | Halxa_0801 | ||
| Methanothermobacter thermautotrophicus | ||||||
| Methanocaldococcus jannaschii | ||||||
| Methanocella paludicola | MCP_1716 | MCP_1719 | MCP_1719 | |||
| Methanospirillum hungatei | ||||||
| Methanosarcina barkeri Fusaro | ||||||
| Methanopyrus kandleri | ||||||
| Palaeococcus pacificus | PAP_09175 | PAP_08440 | PAP_07990 | PAP_00220 | ||
| Pyrococcus furiosus DSM 3638 | PF1158 | PF0144 | PF1492 | |||
| Thermococcus kodakarensis | TK2109 | TK2248 | TK0150 | |||
| Thermococcus litoralis | OCC_00607 | OCC_12346 | OCC_03357 OCC_03332 | OCC_03352 | OCC_09711 | |
| Thermococcus piezophilus | A7C91_04090 | A7C91_02560 | ||||
| Cuniculiplasma divulgatum | CPM_0223 | CPM_0220 | CPM_0220 | CPM_0396 | ||
| Ferroplasma acidarmanus | FACI_IFERC01G0865 | FACI_IFERC01G0868 | FACI_IFERC01G0868 | FACI_IFERC01G1086 | ||
| Picrophilus torridus | PTO0550 | PTO0547 | PTO0547 | PTO0624 | ||
| Thermoplasma acidophilum | Ta1436 | Ta1436 | Ta1366 | |||
| Aciduliprofundum boonei | Aboo_0647 | Aboo_0919 | Aboo_1328 | |||
| Acidilobus saccharovorans | ASAC_0852 | ASAC_1445 | ||||
| Caldisphaera lagunensis | Calag_0308 | Calag_0980 | ||||
| Aeropyrum pernix | APE_2344.1 | APE_1671 | APE_1671 | APE_0951.1 | ||
| Desulfurococcus mucosus | Desmu_0204 | Desmu_0205 | Desmu_0682 | |||
| Ignicoccus hospitalis | ||||||
| Staphylothermus marinus | Smar_0189 | Smar_0190 | Smar_0341 | Smar_1109 | ||
| Thermosphaera aggregans | Tagg_0781 | Tagg_0782 | Tagg_0405 | |||
| Hyperthermus butylicus | Hbut_0508 | Hbut_0507 | Hbut_0181 | |||
| Pyrodictium delaneyi | Pyrde_1321 | Pyrde_1320 | Pyrde_1470 | |||
| Pyrolobus fumarii | Pyrfu_1488 | Pyrfu_1489 | Pyrfu_0135 | |||
| Fervidicoccus fontis | FFONT_0393 | |||||
| Acidianus hospitalis | Ahos_1681 | Ahos_1680 | Ahos_1325 Ahos_1686 Ahos_1684 | |||
| Metallosphaera sedula | Msed_1559 Msed_1507 | Msed_1508 Msed_1558 | Msed_1662 Msed_1481 Msed_1570 | |||
| Saccharolobus solfataricus P2 | SSO3158 | SSO1114 | SSO1115 | SSO1529 | SSO1530 | SSO0920 SSO1061 SSO1105 |
| Stygiolobus azoricus | D1868_09950 D1868_10065 | D1868_10070 D1868_09955 | D1868_04760 D1868_09910 D1868_09915 | |||
| Sulfodiicoccus acidiphilus | HS1genome_2182 | HS1genome_1109 HS1genome_0382 | ||||
| Sulfolobus acidocaldarius DSM 639 | Saci_0309 | Saci_0344 | Saci_0343 | Saci_1384 Saci_0349 Saci_0350 | ||
| Sulfuracidifex tepidarius | IC006_0792 IC006_0273 | IC006_0791 IC006_0272 | IC006_1084 IC006_0260 IC006_0802 | |||
| Sulfurisphaera tokodaii | STK_18870 STK_11950 | STK_11940 STK_18860 | STK_12050 STK_18950 STK_18940 | |||
| Thermofilum pendens | ||||||
| Pyrobaculum calidifontis | Pcal_1406 | Pcal_1403 | Pcal_1403 | |||
| Thermoproteus tenax | ||||||
| Thermoproteus uzoniensis | TUZN_1026 | TUZN_1029 | TUZN_1029 | |||
| Nitrososphaera viennensis | ||||||
| Nitrosopumilus maritimus | ||||||
| “Candidatus Caldiarchaeum subterraneum” | CSUB_C1591 | CSUB_C1263 CSUB_C0792 | CSUB_C0851 CSUB_C1263 | CSUB_C0839 CSUB_C1435 | ||
| Nanoarchaeum equitans | ||||||
| “Candidatus Korarchaeum cryptofilum” | Kcr_0015 | Kcr_0014 | Kcr_1428 | |||
| Lokiarchaeum sp. GC14_75 | Lokiarch_46960 Lokiarch_23930 | Lokiarch_46940 Lokiarch_23910 | Lokiarch_42450 Lokiarch_25060 Lokiarch_24020 | |||
| “Candidatus Bathyarchaeota archaeon” BA1 | AOA65_1547 | AOA65_0858 | AOA65_0858 | |||
| E:E value | E ≤ 4e−78 | E ≤ 2e−132 | E ≤ 3e−116 | E ≤ 1e−145 | E ≤ 9e−68 | |
| 2e−49 ≤ E ≤ 5e−18 | 3e−67 ≤ E ≤ 3e−42 | 7e−36 ≤ E ≤ 8e−06 | E ≤ 1e−05 | 4e−35 ≤ E ≤ 8e−07 | ||
a
The different shades of gray represent different degrees of similarity.