TABLE 2.
Average C and T scores for oligotype occurrence matrices generated from the 10 selected core OTUs
| OTU identification | Higher taxon classification | Total no. of oligotypes | No. of species | Mean C score | Mean T score | Species (no. of oligotypes) |
|---|---|---|---|---|---|---|
| denovo307699 | Achromobacter | 126 | 2 | 0.58 | 0.14 | Achromobacter deleyi (69 oligotypes), Achromobacter aegrifaciens (57 oligotypes) |
| denovo443152 | Acinetobacter | 158 | 4 | 0.71 | 0.08 | Acinetobacter johnsonii (98 oligotypes), Acinetobacter lwoffii (51 oligotypes), Acinetobacter equi (6 oligotypes), Acinetobacter celticus (3 oligotypes) |
| denovo84598 | Brochothrix | 78 | 1 | 0.46 | 0.18 | Brochothrix thermosphacta |
| denovo440404 | Burkholderiaceae | 71 | 1 | 0.22 | 0.18 | Paraburkholderia fungorum |
| denovo191751 | Carnobacterium | 238 | 4 | 0.82 | 0.02 | Carnobacterium divergens (103 oligotypes), Carnobacterium gallinarum (57 oligotypes), Carnobacterium jeotgali/viridans (56 oligotypes), Carnobacterium mobile (22 oligotypes) |
| denovo629236 | Propionibacterium | 197 | 1 | 0.71 | 0.06 | Propionibacterium cyclohexanicum |
| denovo245059 | Pseudomonas | 155 | 6 | 0.67 | 0.08 | Pseudomonas weihenstephanensis (60 oligotypes), Pseudomonas deceptionensis (39 oligotypes), Pseudomonas fragi (21 oligotypes), Pseudomonas gessardii (19 oligotypes), Pseudomonas stutzeri (9 oligotypes), Pseudomonas lactis (7 oligotypes) |
| denovo210339 | Psychrobacter | 192 | 7 | 0.73 | 0.06 | Psychrobacter cibarius (61 oligotypes), Psychrobacter aquaticus (48 oligotypes), Psychrobacter cryohalolentis (36 oligotypes), Psychrobacter okhotskensis (35 oligotypes), Psychrobacter aeronus (8 oligotypes), Psychrobacter pulmonis (2 oligotypes), Psychrobacter maritimus (2 oligotypes) |
| denovo294860 | Staphylococcus | 349 | 9 | 0.85 | 0.03 | Staphylococcus capitis (59 oligotypes), Staphylococcus epidermidis (56 oligotypes), Staphylococcus aureus (55 oligotypes), Staphylococcus xylosus (50 oligotypes), Staphylococcus hominis (41 oligotypes), Staphylococcus equorum (34 oligotypes), Staphylococcus succinus (29 oligotypes), Staphylococcus haemolyticus (19 oligotypes), Staphylococcus warneri (6 oligotypes) |
| denovo518842 | Streptococcus | 99 | 4 | 0.61 | 0.10 | Streptococcus oralis (36 oligotypes), Streptococcus sanguinis (32 oligotypes), Streptococcus thermophilus (27 oligotypes), Streptococcus anginosus (4 oligotypes) |