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. 2020 Nov 12;18:3402–3414. doi: 10.1016/j.csbj.2020.11.002

Table 1.

Interface residues of cRBD and sRBD with ACE2 are shown at 0 ns and 20 ns of simulation. The loss of electrostatic contact can be noted in both states (bold residues).

RBD-ACE2 interface (0 ns)
RBD-ACE2 interface (20 ns)
Virus RBD ACE2 Bond Ekcal/mol Dist Å Atom RBD ACE2 Bond Ekcal/mol Dist Å Atom
SARS-CoV Arg426 Glu329 IH −35.88 2.99 Tyr481 Lys353 H −9.80 2.89 b-
Gly482 Lys353 H −7.20 2.80 b- Tyr436 Asp38 H −5.80 2.75
Tyr491 Glu37 H −4.90 2.56 Gly488 Gly354 H −4.00 2.80 bb
Tyr436 Asp38 H −3.70 2.53 Thr486 Asn330 H −3.40 2.83 b-
Asp463 Ser19 I −1.49 3.61 -b Asp463 Gln24 H −2.60 2.78
Asn479 Glu35 H −1.30 3.18 Thr486 Asp355 H −1.70 2.60
Thr486 Tyr41 H −1.20 2.99 Tyr491 Gly354 A −0.70 3.86 -b
Asn473 Gln24 H −1.00 2.89
SARS-CoV-2 Lys417 Asp30 IH −30.83 2.71 Gln493 Lys31 H −11.60 2.85
Tyr505 Glu37 H −4.60 2.57 Tyr449 Asp38 H −2.80 2.58
Gly502 Lys353 H −3.60 3.10 bb Asn501 Lys353 H −2.80 3.05 b-
Gln498 Lys353 H −2.90 3.00 Gln474 Gln24 H −2.70 2.78
Gln506 Gln325 H −2.60 2.82 Asn487 Gln24 H −2.40 2.85
Asn487 Gln325 H −1.60 2.80 Gln498 Lys353 H −1.60 3.03
Gln493 His34 H −0.50 3.07 Thr500 Lys353 H −1.40 2.71 b-
Tyr489 Phe28 A −0.60 3.75 b-
Gln498 Tyr41 A −0.60 4.52

VH, variable heavy chain; VL, variable light chains; H, hydrogen bond; A, aromatic bond; I, ionic (electrostatic) bond; bb, backbone atoms.