Table 2.
mAB Type | cRBD | scFv | Bond | Ekcal/mol | Dist Å | Atom | |
---|---|---|---|---|---|---|---|
m396 | VH | Thr169 | Ser31 | H | −2.00 | 2.73 | b- |
Gly171 | Thr33 | H | −2.30 | 2.94 | -b | ||
Asp74 | Asn58 | H | −3.10 | 2.77 | – | ||
Gln175 | Val97 | H | −4.00 | 2.92 | b- | ||
VL | Thr45 | Ser93 | H | −1.70 | 2.76 | – | |
Arg77 | Ser94 | H | −1.10 | 3.21 | b- | ||
Arg77 | Asp95 | IH | −19.24 | 2.89 | – | ||
F26G19 | VH | Ser44 | Thr31 | H | −1.50 | 2.80 | -b |
Ser44 | Tyr52 | H | −1.60 | 2.93 | – | ||
Asn106 | Tyr52 | A | −1.20 | 4.05 | – | ||
Asn106 | Asn54 | H | −4.20 | 2.74 | -b | ||
Asn108 | Asp56 | H | −6.70 | 2.99 | – | ||
Asn109 | Asp56 | H | −6.00 | 2.97 | – | ||
Val172 | Gln95 | H | −0.80 | 3.02 | -b | ||
VL | Gly171 | Val92 | H | −1.00 | 3.11 | bb | |
Thr169 | Tyr94 | H | −5.10 | 2.88 | bb | ||
80R | VH | Gly165 | Ser101 | H | −1.70 | 2.81 | b- |
Tyr174 | Arg100 | H | −0.50 | 3.12 | – | ||
VL | Val114 | Trp226 | A | −0.50 | 4.51 | – | |
Asn119 | Arg162 | H | −11.70 | 2.83 | – | ||
Gly154 | Thr206 | H | −3.20 | 2.74 | b- | ||
Cys157 | Ser197 | H | −3.00 | 2.70 | b- | ||
Gln162 | Thr185 | H | −2.10 | 2.77 | – | ||
s230 | VH | Gln162 | Arg54 | H | −2.70 | 2.87 | – |
Phe125 | Asn55 | A | −0.80 | 4.61 | – | ||
Asn156 | Asp60 | H | −3.30 | 2.82 | – | ||
Cys157 | Lys63 | H | −2.80 | 3.58 | – | ||
Leu124 | Tyr104 | H | −3.10 | 2.62 | -b | ||
Tyr90 | Tyr104 | A | −0.00 | 3.91 | – |
VH, variable heavy chain; VL, variable light chains; H, hydrogen bond; A, aromatic bond; I, ionic (electrostatic) bond; bb, backbone atoms. Residue numbers of the cRBD should be tallied with the top numbers in Fig. 2A.