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. Author manuscript; available in PMC: 2020 Nov 12.
Published in final edited form as: J Chem Theory Comput. 2020 Oct 28;16(11):7207–7218. doi: 10.1021/acs.jctc.0c00884

Figure 1.

Figure 1.

Thermodynamic pathway used for (A) absolute and (B) relative binding free energy, and (C) absolute and (D) relative solvation free energy calculations. The protein is depicted in yellow, the aqueous solvent in blue, the initial ligand in purple, and the end ligand in green. Each Free Energy Calculator module requires two distinct systems for alchemical transformations.