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. Author manuscript; available in PMC: 2020 Nov 12.
Published in final edited form as: J Chem Theory Comput. 2020 Oct 28;16(11):7207–7218. doi: 10.1021/acs.jctc.0c00884

Figure 2.

Figure 2.

Schematic overview of Free Energy Calculator. Users need to prepare a protein-ligand complex structure (from RCSB or docking programs) and additional ligand structures. At the final step, two end-state systems are generated for all selected ligands with all necessary topology and force field files.