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. Author manuscript; available in PMC: 2020 Nov 12.
Published in final edited form as: J Chem Theory Comput. 2020 Oct 28;16(11):7207–7218. doi: 10.1021/acs.jctc.0c00884

Table 4.

Relative binding FE results (kcal/mol) of benzene derivatives (in T4-Lysozyme L99A (Figure 8).

Ligand 0 Ligand 1 ΔΔGexp79 NAMD GENESIS
ΔΔG ΔGbindL1ΔGbindL0 ΔΔG ΔGbindL1ΔGbindL0
Benzene 0.33 −0.23 ±0.10 −0.09 ± 0.77 −0.10 ± 0.07 0.17 ± 0.22
Toluene Ethylbenzene −0.24 −0.66 ±0.03 0.06 ± 0.81 −0.43 ± 0.02 −0.25 ± 0.29
Propylbenzene −1.03 −2.14 ±0.06 −0.08 ± 0.81 −1.57 ± 0.08 −1.40 ± 0.23