TABLE A5.

Phenotypic characteristics and clinical parameters at the flock and individual level

Phenotypic characteristics	Flock level	Individual level
All days	Farm (1 or 2) Flock (1 of 2)	Age (integer) Body weight (numeric) Sex (male or female) Footpad integrity (yes/no) Cecal color (A, B, C) Cecal foam (yes/no) Villus length (numeric) Crypt depth (numeric) Villus/crypt ratio (numeric)
Clinical parameters	Flock level	Individual level
Days 14, 21, 28, and 35	Number of Eimeria oocysts in pooled feces (log10 OPG)	Coccidiosis Lesion Scores (0–12) Gut Score (1–10)