Table 3.
Expression levels of genes identified by DMRs between S45F and T41A DTF samples.
| Gene name | Probe number | Median (IQR) | p-value |
|---|---|---|---|
| CCDC6 | 204716_at | 203 (126–239) | 0.034 |
| 225010_at | 617 (554.6–703.4) | 0.579 | |
| FOXK2 | 242937_at | 17 (15–21) | 0.004 |
| 242938_s_at | 34 (32–39) | 0.384 | |
| 226224_at | 149 (141–158) | 0.373 | |
| 203064_s_at | 112 (101–127) | 0.533 | |
| DUX4L6 | 216472_x_at | 11 (8–14) | 0.362 |
| 208201_at | 15 (11–20) | 0.510 | |
| NLRP4 | 242334_at | 2.7 (1.2–4.2) | 0.149 |
| NOC4L | 218860 | 50 (44–55) | 0.628 |
| PERM1 | 224501_at | 1 (1–1) | 0.415 |
Transcript levels are derived from publicly available Affymetrix-based mRNA expression data (GSE58697) of 45 T41A and 34 S45F tumors. Some genes are represented by multiple probe sets. Mann-Whitney U test was used to assess statistical significance in transcript levels of the respective genes between S45F and T41A tumors. Bold numbers indicate significant p values.