Table 1.
Hardware utilization for software tools supported by TranSPHIRE.
| Task | Program name | GPU | CPU | Reference |
|---|---|---|---|---|
| Motion correction | Unblur | X | 20 | |
| MotionCor2 | X | 19 | ||
| CTF estimation | CTER | X | 22 | |
| GCTF | X | 23 | ||
| CTFFIND4 | X | 21 | ||
| Particle picking | crYOLO | X | 17,34 | |
| 2D classification | GPU ISAC | X | Based on ISAC24 | |
| 2D class selection | Cinderella | X | 25 | |
| 3D ab initio reconstruction | RVIPER | X | 18 | |
| 3D refinement | MERIDIEN | X | 18 | |
| Utilities programs | SPHIRE | X | 18 | |
| EMAN2 | X | 27 | ||
| IMOD | X | 35 |
List of all currently supported software tools indicating if the given software runs on CPUs or GPUs within the TranSPHIRE pipeline. Tools are grouped corresponding to the pipeline task they are utilized for.