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. 2020 Nov 11;10:19574. doi: 10.1038/s41598-020-76522-3

Figure 5.

Figure 5

Modeling NiV PNT as a conformational ensemble. Rg distributions of the initial pools generated by (blue dot) Flexible-Meccano (with NMR secondary structure restraints, Rg¯ =  ~ 62 Å) and (red dot) EOM 2.0 (without restraints, Rg¯ =  ~ 62 Å) respectively, and of the corresponding selected ensembles (solid lines) as obtained using EOM 2.0 (both Rg¯ =  ~ 66 Å, see also Fig. 4A). Final best ensembles contain 19 unique conformers in the case of ncSSP NMR-based ensemble and 13 unique conformers in the case of EOM 2.0 random ensemble, respectively. A cartoon representation of three conformers present in the ensembles is also displayed. The structures were drawn using Pymol 2.0.1 (https://pymol.org/2/)11.