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. 2020 Jul 15;6(10):mgen000404. doi: 10.1099/mgen.0.000404

Table 2.

Conservation of key residues in the sequences of each SSN meta-node. The proven activities are rendered in bold type. The presence of sequences with a signal peptide in each meta-node is also indicated. The reference sequences for mannoside-phosphorylases and mannosidases are ADD61463.1 [β-1,4-mannosyl-N,N’-diacetylchitobiose-phosphorylase (20)] and AAO78885.1 [β-1,2-mannosidase (12)], respectively. Both enzymes are functionally and structurally characterized. In meta-node C3, a signal peptide was detected for the characterized members ALJ48509.1 and ACT94389.1, but not for AAO78885.1

Meta-node

Number of full-length sequences

CAZy/metagenomes/total

Sequences with signal peptide

Catalytic residues

Phosphate-binding residues

+1 subsite

Predicted mechanism and linkage specificity

Proton donor

Putative base

C1

221/836/1057

No

D

_

R

H

R

Y

R

D

GPs-β-1–4

C2

ADD61463.1

268/757/1025

No

D

D104

_

R

R168

H

H231

R

R59

Y

Y103

R

R150

D

D304

GPs-β-1–4

C3

AAO78885.1

113/152/265

Yes

D

D142

D/E

E227

_

_

R

R89

E

E141

K

K199

D

D363

GHs-β-1–2

C4

290/76/366

295/366

No

D

_

R

H

R

E

K

D

GPs-β-1–2

70/366

R

E

R

D

GPs-β-1–3

C5

42/70/112

No

D

_

R

H

R

E

R

D

GPs-β-1–3

C6

85/0/85

No

D

_

R

H

R

E

K

D

GPs-β-1–2

UC1

31/66/97

No

D

_

R

H

R

Y

R

D

GPs-β-1–4

UC2

199/0/199

No

D

_

R

H

R

E

K

D

GPs-β-1–2

UC3

135/18/153

124/153

No

D

_

R

H

R/D

E

K

D

GPs-β-1–2

7/153

R/D

E

R

D

GPs-β-1–3

14/153

R/D

Y

R

GPs-β-1–4

UC4

0/53/53

Yes

_

_

_

_

S

M

N

_

GHs

UC5

61/0/61

No

D

_

R

H

R

E

K

D

GPs-β-1–2

UC6

0/11/11

No

D

_

R

H

R

I

R

D

GPs

UC7

9/10/19

No

D

_

R

H

R

E

R

D

GPs-β-1–3

UC8

26/7/33

No

D

_

R

H

R

E

K

D

GPs-β-1–2

UC9

29/0/29

No

D

_

R

H

R

E

K

D

GPs-β-1–2