Table 2.
Residues of the bacterial Dihydrofolate Reductase (DHFR) observed in close contact with the drugs by hydrogen bonds and non bonded interactions after docking and Molecular Dynamic (MD) simulation are given
| Drug | Interactions | Residues interacting after Autodock | Residues interacting after MD simulation |
|---|---|---|---|
| Ethacrynic acid | Hydrogen bonds | Ile 5 | None |
| Ile 94 | None | ||
| Gly 97 | None | ||
| Tyr 100 | None | ||
| Thr 123 | None | ||
| Sulphadiazine | Hydrogen bonds | Gly 15 | Gly 15 |
| Glu 17 | |||
| Asp 27 | Asp 27 | ||
| Tyr 100 | Tyr 100 | ||
| Non bonded | Ala 6 | ||
| Ala 7 | Met 16 | ||
| Leu 24 | Leu 24 | ||
| Indapamide | Hydrogen bonds | Leu 24 | Glu 17 |
| Asn 23 | |||
| Asp 27 | Leu 24 | ||
| Asp 27 | |||
| Non bonded | Ile 5 | None | |
| Leu 28 | None | ||
| Phe 31 | None | ||
| Ile94 | None | ||
| Tyr 100 | None | ||
| Hydrochlorothiazide | Hydrogen bonds | Ala 7 | |
| Ile14 | Ala 7 | ||
| Thr 46 | Glu 17 | ||
| Gly 97 | Thr 46 | ||
| Tyr 100 | |||
| Thr 123 | |||
| Non bonded |
Met 16 Ile 94 |
Glu 17 His 45 |