TABLE 2.
Genes differentially expressed between the VISA and VSSA strains.
| Gene_ID | log2 fold change | RT-qPCR | P-value | q-value | Description |
| Autolysin-associated genes | |||||
| SAOUHSC_01524 | –6.4203 | –2.10 | 2.86E-11 | 5.14E-11 | Holin-like protein |
| SAOUHSC_02019 | –8.813 | –3.12 | 4.91E-42 | 2.57E-41 | Autolysin |
| SAOUHSC_00232 | –2.8307 | –1.39 | 4.62E-33 | 2.05E-32 | Murein hydrolase regulator LrgA |
| SAOUHSC_00233 | –2.2949 | –5.92 | 3.18E-56 | 2.01E-55 | Anti-holin-like protein LrgB |
| Cell wall-associated genes | |||||
| SAOUHSC_00069 | –4.6639 | –7.32 | 2.34E-46 | 1.30E-45 | Protein A Spa |
| SAOUHSC_00229 | –2.172 | –4.37 | 0 | 0 | Cell wall biosynthesis protein ScdA |
| SAOUHSC_01110 | 2.6238 | 1.04 | 1.01E-23 | 3.58E-23 | Fibrinogen-binding protein-like protein |
| SAOUHSC_02802 | 4.2929 | ND | 7.78E-06 | 1.18E-05 | Fibronectin binding protein B |
| SAOUHSC_01142 | –2.4371 | –1.34 | 1.58E-93 | 1.47E-92 | Cell division protein MraZ |
| SAOUHSC_02963 | –2.5384 | –2.98 | 1.45E-17 | 4.14E-17 | Clumping factor B ClfB |
| SAOUHSC_00544 | 2.9992 | 1.50 | 4.01E-29 | 1.44E-28 | Fibrinogen-binding protein SdrC |
| SAOUHSC_00545 | 2.1248 | 3.96 | 6.55E-10 | 1.13E-09 | Fibrinogen-binding protein SdrD |
| SAOUHSC_00114 | 8.0625 | 5.83 | 0 | 0 | Capsular polysaccharide biosynthesis protein Cap5A |
| SAOUHSC_00115 | 7.5579 | 4.93 | 0 | 0 | Capsular polysaccharide biosynthesis protein Cap5B |
| SAOUHSC_00116 | 8.2873 | 2.34 | 0 | 0 | Capsular polysaccharide biosynthesis protein Cap8C |
| SAOUHSC_00117 | 9.0369 | ND | 0 | 0 | Capsular polysaccharide biosynthesis protein Cap5D |
| SAOUHSC_00118 | 8.9985 | 2.40 | 2.08E-88 | 1.89E-87 | Capsular polysaccharide biosynthesis protein Cap5E |
| SAOUHSC_00119 | 7.6467 | 4.69 | 0 | 0 | Capsular polysaccharide biosynthesis protein Cap8F |
| SAOUHSC_00126 | 6.0723 | 7.23 | 7.07E-33 | 2.77E-32 | Capsular polysaccharide biosynthesis protein Cap8M |
| SAOUHSC_00176 | –6.6897 | –2.98 | 0 | 0 | Extracellular solute-binding protein |
| Virulence-associated genes | |||||
| SAOUHSC_01121 | –4.1632 | –6.23 | 0 | 0 | Alpha-hemolysin |
| SAOUHSC_01942 | –4.4034 | –2.01 | 0.00013251 | 0.00016629 | Serine protease SplA |
| SAOUHSC_01941 | –3.2598 | –3.29 | 0.0003595 | 0.00042238 | Serine protease SplB |
| SAOUHSC_01939 | –3.7964 | –1.23 | 2.73E-08 | 4.78E-08 | Serine protease SplC |
| SAOUHSC_00300 | –2.4787 | –1.03 | 2.09E-39 | 1.04E-38 | Lipase |
| SAOUHSC_02706 | –2.0555 | –6.25 | 2.26E-10 | 4.59E-10 | Immunoglobulin G-binding protein Sbi |
| SAOUHSC_00177 | –6.0315 | ND | 0 | 0 | Maltose ABC transporter permease |
| Hypothetical protein | |||||
| SAOUHSC_00179 | –6.4487 | ND | 0 | 0 | Hypothetical protein |
| SAOUHSC_00180 | –6.1303 | –0.2.98 | 0 | 0 | Hypothetical protein |
| SAOUHSC_00208 | –7.054 | ND | 1.13E-36 | 4.73E-36 | Hypothetical protein |
| SAOUHSC_00049 | –8.0233 | –4.92 | 4.32E-30 | 1.57E-29 | Hypothetical protein |
| Transcriptional regulators | |||||
| SAOUHSC_02265 | –6.3987 | –3.25 | 1.39E-56 | 1.35E-55 | Accessory gene regulator protein A |
| SAOUHSC_02261 | –2.2777 | –4.24 | 2.80E-35 | 1.63E-34 | Accessory gene regulator protein B |
| SAOUHSC_02264 | –5.9723 | –1.53 | 0 | 0 | Accessory gene regulator protein C |
| SAOUHSC_00469 | 1.3894 | ND | 0 | 0 | Regulatory protein SpoVG |
| SAOUHSC_02315 | 2.5381 | ND | 1.88E-05 | 2.33E-05 | DNA-binding response regulator |
| SAOUHSC_02862 | 1.087 | 3.72 | 0 | 0 | ATP-dependent Clp protease ATP-binding subunit ClpC |
ND, not done.