Table 2.
Spearman’s rank correlation coefficient between modified model parameters and fold decreases of simulations when varied simultaneously.
| Parameter | Description | Range | SRCC |
|---|---|---|---|
| dp | Peptide decay rate | ± 50% | 0.0575 |
| kp | Mature DC uptake rate | ± 50% | 0.0283 |
| kPi | Immature DC uptake rate | ± 50% | -0.0825 |
| kPϕ | Clearance rate due to splenic macrophages | ± 50% | -0.0342 |
| kD | Mature DC presentation rate | ± 50% | -0.0274 |
| χ | Concentration of non-vaccine-associated proteins | ± 50% | -0.0530 |
| δD | Immature DC decay rate | ± 50% | 0.0198 |
| dA | Adjuvant washout rate | ± 50% | 0.1015 |
| dD | Mature DC decay rate | ± 50% | 0.0989 |
| kS | Semi-matured/tolerized DC maturation rate | ± 50% | 0.0505 |
| dm | pMHC degradation rate | ± 50% | -0.0322 |
| dN | Naive CTL egress rate | ± 50% | -0.1761 |
| dNH | Naive helper T cell egress rate | ± 50% | -0.0490 |
| dNR | Naive nTreg turnover rate | ± 50% | -0.0285 |
| τm | DC migration time | ± 50% | 0.0717 |
| kDC | Naive CTL-DC interaction rate | ± 50% | -0.1214 |
| V tissue | Volume of tissue site | ± 50% | 0.0427 |
| V LN | Volume of lymph node | ± 50% | -0.0591 |
| R LH | Ratio of low-high avidity naive CTLs | 10-500 | -0.0630 |
| τa | T cell division time | ± 50% | 0.0536 |
| Φ 0 | Antigen saturation constant | ± 50% | -0.0239 |
| nT | Number of CTL divisions | 10-20 | 0.4981 |
| nH | Number of helper T cell divisions | 4-10 | -0.0036 |
| nR | Number of nTreg divisions | ± 50% | -0.2096 |
| dR | iTreg decay rate | ± 50% | 0.0907 |
| dRN | Effector nTreg decay rate | ± 50% | -0.1181 |
| dT | Effector CTL decay rate | ± 50% | 0.0497 |
| μ | CTL-Treg interaction rate | ± 50% | -0.2410 |
| kG | T cell-growth factor interaction rate | ± 50% | -0.0841 |
| kR | iTreg differentiation rate | ± 50% | 0.0951 |
| dH | Effector helper T cell decay rate | ± 50% | -0.0119 |
| r 1 | Secretion rate of growth signal by CTLs | ± 50% | 0.0557 |
| r 2 | Secretion rate of growth signal by helper T cells | ± 50% | 0.0508 |
| dG | Growth factor decay rate | ± 50% | 0.0774 |
| γ | Growth rate of melanomas | 3 × 10-3 to 8.7 × 10−2/day | -0.7318 |
| κ | Carrying capacity of melanomas | 48.7 to 2360 k/μL | 0.0260 |
| α | pMHC regeneration rate | ± 50% | 0.0925 |
| kT | Tumor-CTL interaction rate | ± 50% | 0.0998 |
| pT | Probability of trogocytosis | ± 50% | -0.1336 |
| ω 1 | Lysis likelihood for lowest avidity (j = 1) CTL | ± 50% | 0.0588 |