Table 1.
Summary of the small RNA sequencing and analysis of control and Rhizoctonia solani-infected rice genotypes.
| Sample Name | Total Number of Reads | Clean Reads before Data Filtering | Q30 (%) | Clean Reads after Data Filtering | Clean Reads (18–24 nt) | Identified Known miRNAs | Identified Novel miRNAs |
|---|---|---|---|---|---|---|---|
| R. solani-infected samples | |||||||
| TN1 | 17,292,908 | 17,277,169 | 96.65 | 16,998,190 | 1,209,465 | 89 | 7 |
| BPT5204 | 19,838,709 | 19,817,284 | 96.7 | 19,603,829 | 3,442,243 | 282 | 8 |
| N22 | 12,331,370 | 12,318,143 | 96.45 | 12,028,969 | 1,563,885 | 24 | 9 |
| Vandana | 15,584,456 | 15,566,007 | 96.42 | 15,179,461 | 1,082,338 | 278 | 21 |
| Tetep | 16,772,072 | 16,754,325 | 96.64 | 16,346,243 | 2,601,317 | 161 | 9 |
| Pankaj | 14,666,490 | 14,652,163 | 96.66 | 14,207,919 | 1,023,439 | 147 | 4 |
| Control samples | |||||||
| TN1 | 18,776,171 | 18,757,059 | 96.58 | 18,058,533 | 822,299 | 95 | 7 |
| BPT5204 | 17,754,335 | 17,733,540 | 95.66 | 17,107,679 | 1,202,770 | 104 | 5 |
| N22 | 16,568,740 | 16,549,626 | 96.38 | 15,910,033 | 1,397,952 | 24 | 2 |
| Vandana | 15,698,991 | 15,682,752 | 96.48 | 14,906,413 | 1,062,798 | 154 | 6 |
| Tetep | 15,304,171 | 15,283,850 | 96.11 | 14,364,145 | 986,089 | 43 | 2 |
| Pankaj | 16,132,109 | 16,114,741 | 96.57 | 15,524,879 | 851,888 | 128 | 5 |