| ACC | 7-amino-4 carbamoylmethylcoumarin |
| AM | Acetoxymethyl |
| BONCAT | Bio-orthogonal non-canonical amino acid tagging |
| BODIPY | 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene |
| CuAAC | Copper-catalyzed azide-alkyne cycloaddition |
| Cy5 | Cyanine 5 |
| DAA | D-amino acid |
| DAP | mesodiaminopimelic acid |
| DDAO | 7-hydroxy-9H-(1,3-dichloro-9,9-dimethylacridin-2-one) |
| Ddl | D-alanine-D-alanine ligase |
| DNA | Deoxyribonucleic acid |
| DMN | 4-N,N-Dimethylamino-1,8-naphthalimide |
| FACS | Fluorescence-activated cell sorting |
| FDA | Federal drug administration |
| FDAA | Fluorescent D-Amino Acid |
| FDL | Fluorescein-D-Lysine |
| FRET | Fluorescence resonance energy transfer |
| GFP | Green fluorescent protein |
| HADA | HCC-amino-D-alanine |
| Hip1 | Hydrolase important for pathogenesis 1 |
| KDO | 3-deoxy-D-manno-octulosonic acid |
| LPS | Lipopolysaccharide |
| MOA | Mode of action |
| Mtb | Mycobacterium tuberculosis |
| NADA | NBD-amino-D-alanine |
| NBD | 7-Amino-4-nitro-2,1,3-benzoxadiazole |
| NTR | nitroreductase |
| OM | Outer membrane |
| Fph | Fluorophosphonate-binding hydrolase |
| PBP | Penicillin-binding proteins |
| pNA | p-nitroaniline |
| PET | Positron-emission tomography |
| PG | Peptidoglycan |
| SDS-PAGE | Sodium dodecyl sulphate-polyacrylamide gel electrophoresis |
| STORM | Stochastic optical reconstruction microscopy |
| SuFEx | Sulfur fluoride exchange |
| TAMRA | Tetramethylrhodamine |
| TDL | TAMRA-d-lysine |
| VF-FL | Vibrioferrin-Fluorescein |