ABC-HRP	avidin-biotin complex-horse radish peroxidase
ACTB	actin cytoplasmic 1
AKT3	V-akt murine thymoma viral oncogene homolog 3
BBB	blood brain-barrier
BST2	CD317, tethrin
CACNA1E	calcium voltage-gated channel subunit alpha 1E
CALM	calmodulin
CAMK2A	calcium/calmodulin-dependent protein kinase II alpha
CAMK4	calcium/calmodulin-dependent protein kinase IV
cAMP	cyclic adenosine monophosphateP
CCL2	C-C motif chemokine ligand 2
CCL3	C-C motif chemokine ligand 3
CCL4	C-C motif chemokine ligand 4
CCR5	C-C motif chemokine receptor 5 (gene/pseudogene)
CD163	CD163 molecule, Scavenger Receptor Cysteine-Rich Type 1 Protein M130
CD274	cluster of differentiation 274, programmed death-ligand 1
CD74	CD74 molecule, HLA class II histocompatibility antigen gamma chain
CD80	co-stimulatory molecule B7-2
CD86	cluster of differentiation 86, B7-2
CD8A	CD8a molecule, T-cell surface glycoprotein CD8 alpha chain
cDNA	complementary DNA
CFAS	Cognitive Function and Ageing Study
CNS	central nervous system
COL6A3	collagen type VI alpha 3 chain
CX3CR1	C-X3-C motif chemokine receptor 1
CYBB	cytochrome b-245, beta polypeptide
DAVID	Database for Annotation, Visualization and Integrated Discovery
DEPC	diethylpyrocarbonate
DSCL	deep subcortical lesions
ENTPD1	ectonucleoside triphosphate diphosphohydrolase 1
EPSTI1	epithelial stromal interaction protein 1
FCER1G	Fc fragment of IgE receptor Ig
FCGR1A	Fc fragment of immunoglobulin gamma Fc receptor 1A
FCGR2A	Fc fragment of immunoglobulin gamma Fc receptor 2A
FGL2	fibrinogen like 2
FPR1	formyl peptide receptor 1
GABA	gamma-aminobutyric acid
GAPDH	glyceraldehyde-3-phosphate dehydrogenase
GBP5	guanylate-binding protein 5
GEO	gene expression omnibus
GRIA	glutamate receptor, ionotropic, AMPA
GRIN1	glutamate receptor, ionotropic, N-methyl D-aspartate 1
H&E	haematoxylin and eosin
HAVCR2	hepatitis A virus cellular receptor 2
HLA-DMB	major histocompatibility complex, class II, DM beta
HLA-DPA1	major histocompatibility complex, class II, DP alpha 1
HLA-DPB1	major histocompatibility complex, class II, DP beta 1
HLA-DQB1	major histocompatibility complex, class II, DQ beta 1
HLA-DRA	major histocompatibility complex, class II, DR alpha
IFI35	interferon induced protein 35
IFI44	interferon induced protein 44
IFI44L	interferon induced protein 44-like
IFIT1	interferon induced protein with tetratricopeptide repeats 1
IFIT3	interferon induced protein with tetratricopeptide repeats 3
IFNAR1	interferon alpha receptor subunit 1
IGSF6	immunoglobulin superfamily member 6
IHC	immunohistochemistry
IKBKB	inhibitor of nuclear factor kappa B kinase subunit beta
IL1A	interleukin 1 alpha
IL1B	interleukin 1 beta
IRF7	interferon regulatory factor 7
IRF9	interferon regulatory factor 9
ISG15	interferon-stimulated gene 15
ITGAX	integrin, alpha X (complement component 3 receptor 4 subunit), CD11c
IVT	in vitro transcription
JUN	jun proto-oncogene, AP-1 transcription factor subunit
KEGG	Kyoto Encyclopedia of Genes and Genomes
LCM	laser capture microdissection
LCP2	lymphocyte cytosolic protein 2
LFB	luxol fast blue
LY6E	lymphocyte antigen 6E
MAPK	mitogen-activated protein kinase
MHC-II	major histocompatibility complex class II
MRC1	mannose receptor C-type 1
MRI	magnetic resnance imaging
mRNA	messenger ribonucleic acid
MS4A6A	membrane spanning 4-domains A6A
MSR1	macrophage scavenger receptor 1
MX1	MX dynamin like GTPase 1
OAS1	2’-5’-oligoadenylate synthetase 1
OAS2	2’-5’-oligoadenylate synthetase 2
OAS3	2’-5’-oligoadenylate synthetase 3
PCA	principal component analysis
PHF21A	PHD finger protein 21A
PI3K-Akt	phosphatidylinositol 3-kinase-protein kinase
PTGS2	prostaglandin-endoperoxide synthase 2
PVL	periventricular lesions
QC	quality control
REC	research ethics committee
RPLP0	60S acidic ribosomal protein P0
RSAD2	radical S-adenosyl methionine domain containing 2
RT	room temperature
SAMSN1	SAM domain, SH3 domain and nuclear localisation signals 1
SLAMF8	SLAM family member 8
TAC	transcriptome analysis console
TFEC	transcription factor EC
TREM2	triggering receptor expressed on myeloid cells 2
UBE2L6	ubiquitin conjugating enzyme E2 L6
USP18	ubiquitin specific peptidase 18
WM	white matter
WML	white matter lesions
XAF1	XIAP-associated factor 1