Table 2.
Databases Developed for Plant Ubiquitylation.
| Name | Website | Aims | Updated Time |
|---|---|---|---|
| UbiProt | http://ubiprot.org.ru | experimentally obtained | 2007 |
| PEIMAN | http://bs.ipm.ir/softwares/PEIMAN | predict and compute the ubiquitylation and other PTMs | 2015 |
| plantsUPS | http://bioinformatics.cau.edu.cn/plantsUPS | comparative analysis of UPS in higher plants | 2009 |
| COFRADIC method | http://bioinformatics.psb.ugent.be/webtools/Ub_viewer | Arabidopsis | 2016 |
| PTMCode | https://ptmcode.embl.de | integrative information of known and predicted PTMs | 2015 |
| dbPTM | http://dbptm.mbc.nctu.edu.tw | comprehensively functional and structural analyses for PTMs | 2019 |
| Plant PTM Viewer | https://www.psb.ugent.be/webtools/ptm-viewer | tools to analyze the potential role of PTMs | 2019 |
| CKSAAP_UbSite | http://systbio.cau.edu.cn/cksaap_ubsite/i | software to predict ubiquitylation sites | 2013 |
| UbiPred | http://flipper.diff.org/app/tools/info/2503 | predict ubiquitylation sites | 2010 |
| UbPred | http://www.ubpred.org | random forest-based predictor of potential ubiquitination sites | 2010 |