A/H5N1	influenza A virus subtype H5N1
A3G	apolipoprotein B mRNA editing enzyme catalytic subunit 3G (cytidine deaminase)
AAvV-1	avian avulavirus 1
ANG	angiogenin
APOBEC	apolipoprotein B editing complex
APOER2	apolipoprotein E receptor 2
CpG	5′C—phosphate—G3′
Cys	cysteine
DCV	Drosophila C virus
DENV	dengue virus
DNA	deoxyrybonucleic acid
DNMT2	DNA methyltransferase 2
dsRNA	double-stranded RNA
EBOV	Ebola virus
EBV	Epstein-Barr virus
EGCG	epigallocatechin-3-gallate
eRNA	enhancer RNA
FeHV-1	feline herpesvirus type 1
GEO	Gene Expression Omnibus
Glu	glutamic acid
Gly	glycine
HBV	hepatitis B virus
HCV	hepatitis C virus
hDNMT1	human DNA methyltransferase 1
hDNMT3Acat	human DNA methyltransferase 3A catalytic domain
HIV-1	human immunodeficiency virus 1
HMPV	human metapneumovirus
hnRNPK	heterogeneous nuclear ribonucleoprotein K
HPV	human papillomavirus
HSV-1	herpes simplex virus 1
HTLV	human T-lymphotropic virus
IAV	influenza A virus
IFN-β	interferon beta
KSHV	Kaposi’s sarcoma-associated herpesvirus
Leu	leucine
lncRNA	long non-coding RNA
m5C	5-methylcytosine
m6A	N6-methyladenosine
MDA-5	melanoma differentiation-associated protein 5
Met	methionine
miRNA	microRNA
MLV	murine leukemia virus
mRNA	messenger RNA
mt tRNA	mitochondrial tRNA
NDV	Newcastle disease virus
Nop2	nucleolar protein 2
Nsp3	non-structural protein 3
NSUN	NOL1/NOP2/SUN domain
nt	nucleotide
PGC-1α	peroxisome proliferator-activated receptor gamma coactivator 1-alpha
PKR	RNA-dependent protein kinase
P-TEFb	positive transcription elongation factor b
Rcm1	rRNA (cytosine-C5-)-methyltransferase
RNA	ribonucleic acid
rRNA	ribosomal RNA
RSV	respiratory syncytial virus
RVFV	Rift Valley fever virus
SAM	S-adenosylmethionine
SARS-Bat SRBD	SARS-CoV-like virus isolated from bats that contains the spike-protein receptor-binding domain from wild type SARS-CoV Urbani
SARS-CoV	severe acute respiratory syndrome coronavirus
SARS-CoV-2	severe acute respiratory syndrome coronavirus 2
snRNA	small nuclear RNA
+ssRNA	positive-sense single-stranded RNA
-ssRNA	negative-sense single-stranded RNA
ssRNA	single-stranded RNA
svRNA	small non-coding RNA fragments derived from vtRNA
svRNA	small viral RNA
TAR	transactivation response element
THOC4/ALYREF	THO complex subunit 4/Aly/REF export factor
Thr	threonine
tiRNA	tRNA-derived stress-induced RNA
TRDMT1	tRNA methyltransferase 1
TREX	transcription export complex
tRFs	tRNA-derived non-coding fragments
Trm4	multisite-specific tRNA:m5C-methyltransferase
tRNA	transfer RNA
UHPLC	ultrahigh-performance liquid chromatography
UPLC-MS/MS	ultra-performance liquid chromatography and tandem mass spectrometry
VSV	vesicular stomatitis virus
vtRNA	small vault RNA
WNV	West Nile virus
ZIKV	Zika virus