Table 1.
Genome Names, Accession Number, and Isolation Sources for Genomes Used in These Analyses
| Genome | GenBank Accession | Isolation Source | Genome Size (Mb) | Contigs | %GC | Number of Genes | % N sequence | Ref | BUSCO String |
|---|---|---|---|---|---|---|---|---|---|
| Bombella apis G7_7_3c | GCA_002079945.1 | Apis mellifera hindgut | 2.01 | 1 | 59.42 | 1,873 | 0 | C: 98.2%[S: 98.2%, D: 0.0%], F: 0.9%, M: 0.9%, n: 221 | |
| Bombella apis SME1 | GCA_009362775.1 | Apis mellifera honey | 2.09 | 11 | 59.51 | 1,984 | 0 | C: 98.2%[S: 98.2%, D: 0.0%], F: 0.9%, M: 0.9%, n: 221 | |
| Bombella apis A29 | GCA_002917995.1 | Apis mellifera larva | 2.01 | 27 | 59.39 | 1,846 | 0 | C: 98.2%[S: 98.2%, D: 0.0%], F: 0.9%, M: 0.9%, n: 221 | |
| Bombella apis B8 | GCA_002917945.1 | Apis mellifera larva | 2.01 | 29 | 59.38 | 1,854 | 0 | C: 98.2%[S: 98.2%, D: 0.0%], F: 0.9%, M: 0.9%, n: 221 | |
| Bombella apis C6 | GCA_002917985.1 | Apis mellifera larva | 2.01 | 34 | 59.38 | 1,852 | 0 | C: 98.2%[S: 98.2%, D: 0.0%], F: 0.9%, M: 0.9%, n: 221 | |
| Bombella apis AM169 | GCA_000723565.1 | Apis mellifera stomach | 1.98 | 9 | 59.32 | 1,816 | 0 | C: 95.9%[S: 95.9%, D: 0.0%], F: 2.7%, M: 1.4%, n: 221 | |
| Bombella apis 3.A.1 | GCA_002150125.1 | Honey | 2.01 | 24 | 59.41 | 1,864 | 0 | C: 98.2%[S: 98.2%, D: 0.0%], F: 0.9%, M: 0.9%, n: 221 | |
| Bombella apis M18 | GCA_002150105.1 | Apis mellifera stomach | 2.01 | 11 | 59.35 | 1,972 | 0 | C: 97.7%[S: 97.7%, D: 0.0%], F: 0.9%, M: 1.4%, n: 221 | |
| Bombella intestini R-52487 | GCA_002003665.1 | Bombus lapidarius crop | 2.02 | 12 | 54.94 | 1,910 | 0 | C: 98.6%[S: 98.6%, D: 0.0%], F: 0.9%, M: 0.5%, n: 221 | |
| Bombella sp. AS1 | GCA_002592045.1 | Apis mellifera larva | 1.85 | 13 | 52.64 | 1,738 | 0 | C: 96.4%[S: 96.4%, D: 0.0%], F: 0.9%, M: 2.7%, n: 221 | |
| Saccharibacter sp. EH611 | GCA_009834765.1 | Anthophora sp. Crop | 2.28 | 25 | 51.47 | 2,253 | 0 | C: 99.1%[S: 99.1%, D: 0.0%], F: 0.0%, M: 0.9%, n: 221 | |
| Saccharibacter sp. EH60 | GCA_009834775.1 | Anthophora sp. Crop | 2.32 | 30 | 51.47 | 2,304 | 0 | C: 99.1%[S: 99.1%, D: 0.0%], F: 0.0%, M: 0.9%, n: 221 | |
| Saccharibacter sp. EH70 | GCA_009834795.1 | Anthophora sp. Crop | 2.29 | 26 | 50.47 | 2,215 | 0 | C: 99.1%[S: 99.1%, D: 0.0%], F: 0.0%, M: 0.9%, n: 221 | |
| Saccharibacter floricola DSM15669 | GCA_000378165.1 | Flower | 2.38 | 43 | 51.22 | 2,352 | 0.0018 | C: 99.1%[S: 99.1%, D: 0.0%], F: 0.0%, M: 0.9%, n: 221 | |
| Saccharibacter sp. 17.LH.SD | GCA_009834805.1 | Melissodes sp. Crop | 2.10 | 13 | 48.61 | 1,996 | 0 | C: 98.2%[S: 98.2%, D: 0.0%], F: 0.9%, M: 0.9%, n: 221 | |
| Gluconobacter oxydans H24 | GCA_000311765.1 | Industrial sample | 3.82 | 2 | 56.24 | 3,742 | 0 | C: 98.6%[S: 97.7%, D: 0.9%], F: 0.5%, M: 0.9%, n: 221 |
Note.—Bombella apis G7_7_3c is the B. apis reference genome. BUSCO string abbreviations are as follows: Complete: X%[Singleton: X%, Duplicated: X%]; Fragmented: 0.0%; Missing: X%; number of genes in the reference set: 221. C, complete; S, singleton (of the complete reference genes, what % are singleton in the genome being tested); D, duplicated (of the complete reference genes, what % are duplicated in the genome being tested); F, fragmented; M, missing; n, number of genes in reference set.