Table 2.
Rfam version 14.2 matches to the SARS-CoV-2 RefSeq entry NC_045512.2
| RefSeq coordinates | Rfam accession | Rfam ID | Rfam description | Comment |
|---|---|---|---|---|
| NC_045512.2/1-299 | RF03120 | Sarbecovirus-5UTR | Sarbecovirus 5’ UTR | See Rfam family RF03117 for Betacoronavirus 5’ UTR. |
| NC_045512.2/13,469-13,550 | RF00507 | Corona_FSE | Coronavirus frameshifting stimulation element | |
| NC_045512.2/29,536-29,870 | RF03125 | Sarbecovirus-3UTR | Sarbecovirus 3’ UTR | See Rfam family RF03122 for Betacoronavirus 3’ UTR. |
| NC_045512.2/29,603-29,662 | RF00164 | Corona_pk3 | Coronavirus 3’ UTR pseudoknot | The family annotates the pseudoknot found in the 3’ UTR (RF03120). |
| NC_045512.2/29,727-29,769 | RF00165 | s2m | Coronavirus 3’ stem-loop II-like motif (s2m) | The family is a subset of the 3’ UTR model (RF03120) that corresponds to the PDB:1XJR 3D structure from SARS-CoV-1. |