Table 2.
List of 38 differentially methylated positions
Cpg loci | Delta β | Adjusted p value | Chromosome | Gene | Feature | |
---|---|---|---|---|---|---|
1 | cg10636246 | − 0.0405317 | 9.58 × 10–5 | 1 | AIM2 | TSS1500 |
2 | cg02481950 | 0.01975019 | 0.00012239 | 16 | METTL9 | Body |
3 | cg14427590 | 0.02273577 | 0.0001344 | 17 | IGR | |
4 | cg05740793 | 0.04394973 | 0.0003859 | 11 | IGR | |
5 | cg13965201 | 0.0290582 | 0.00193489 | 1 | IGR | |
6 | cg21540367 | 0.00991642 | 0.0023237 | 7 | LRCH4 | Body |
7 | cg05001044 | 0.05331962 | 0.00236357 | 1 | MIR1977 | TSS1500 |
8 | cg09048334 | 0.03476521 | 0.00272688 | 6 | IGR | |
9 | cg22519265 | 0.01080344 | 0.00394136 | 17 | ATP2A3 | 3′UTR |
10 | cg02448796 | 0.03283323 | 0.00510789 | 1 | KCNAB2 | Body |
11 | cg17641710 | 0.0238572 | 0.00582785 | 3 | GNAI2 | Body |
12 | cg03819286 | 0.02679297 | 0.00622737 | 16 | MGRN1 | TSS1500 |
13 | cg10855342 | 0.00640701 | 0.00634387 | 4 | ALPK1 | 5′UTR |
14 | cg15197458 | 0.01401478 | 0.00792343 | 19 | IGR | |
15 | cg00832928 | 0.02884309 | 0.00838196 | 3 | SELT | Body |
16 | cg22688566 | 0.02832814 | 0.00925244 | 17 | MYO18A | Body |
17 | cg25966751 | 0.02254565 | 0.01015631 | 14 | IGR | |
18 | cg20056593 | 0.01654389 | 0.01723034 | 12 | IGR | |
19 | cg27229664 | 0.02206902 | 0.01770546 | 16 | KIAA0513 | 5′UTR |
20 | cg22505006 | 0.02903491 | 0.02133475 | 1 | ZBTB7B | 5′UTR |
21 | cg05343106 | 0.02028 | 0.0229423 | 11 | DNAJB13 | TSS200 |
22 | cg17714703 | 0.03310906 | 0.02311756 | 19 | UHRF1 | Body |
23 | cg07081759 | 0.0249997 | 0.02342596 | 10 | FAM53B | Body |
24 | cg13444131 | 0.00917468 | 0.0237334 | 19 | DYRK1B | 5′UTR |
25 | cg22434506 | 0.00961761 | 0.02800703 | 12 | IFFO1 | Body |
26 | cg17515347 | − 0.0473728 | 0.02813301 | 1 | AIM2 | TSS1500 |
27 | cg20003976 | 0.01435695 | 0.02817662 | 1 | ACADM | TSS1500 |
28 | cg09007354 | 0.0237598 | 0.03272807 | 1 | GLIS1 | 5′UTR |
29 | cg20285559 | 0.01014608 | 0.03348693 | 1 | THAP3 | Body |
30 | cg19769147 | 0.01949328 | 0.03474175 | 14 | PACS2 | Body |
31 | cg24843003 | 0.02944661 | 0.03518602 | 19 | DAZAP1 | Body |
32 | cg03393322 | 0.0084795 | 0.03783743 | 7 | SDK1 | Body |
33 | cg04757081 | 0.01403053 | 0.03821293 | 10 | IGR | |
34 | cg01084918 | 0.02041746 | 0.03843211 | 1 | FAM40A | TSS1500 |
35 | cg01101459 | 0.02894185 | 0.04051284 | 1 | IGR | |
36 | cg03546163 | − 0.0535485 | 0.04329215 | 6 | FKBP5 | 5′UTR |
37 | cg21393135 | 0.00327746 | 0.04491255 | 6 | VARS | Body |
38 | cg21155515 | − 0.0075201 | 0.04995584 | 17 | CANT1 | 1stExon |
TSS 1500 located 200-1500 nucleotides upstream transcriptional start site, TSS 200 located 0-200 nucleotides upstream transcriptional start site, Body body of the gene, IGR intergenic regions, 5′UTR and 3′UTR are, respectively, 5′ and 3′ untranslated regions