TABLE 4.
SNP namea | Chr | Position | MLM-P value | R2 (%) | MAF | Allele | MAE | Putative candidate genes | Predicted function of candidate gene |
S1_82702920 | 1 | 82702920 | 5.0287E-06 | 0.06 | 0.46 | G/A | 0.09 | GRMZM2G506660 | ATP binding protein |
S1_215340710 | 1 | 215340710 | 7.0783E-06 | 0.07 | 0.10 | T/C | –0.06 | GRMZM2G106558 | myb146—MYB-transcription factor 146 |
S2_5924471 | 2 | 5924471 | 8.3283E-06 | 0.06 | 0.07 | T/C | –0.7 | GRMZM2G372074 | Protein encodes a protease inhibitor/LTP family protein |
S2_148656983 | 2 | 148656983 | 6.2212E-06 | 0.07 | 0.42 | C/G | 0.17 | GRMZM2G115659 | Carbohydrate transporter/sugar porter/transporter |
S2_148656984 | 2 | 148656984 | 6.0999E-06 | 0.07 | 0.43 | G/C | 0.17 | GRMZM2G115658 | Carbohydrate transporter/sugar porter/transporter |
S6_150800750 | 6 | 150800750 | 5.8341E-06 | 0.08 | 0.06 | T/G | 0.29 | GRMZM2G067156 | Unknown |
S6_165317183 | 6 | 165317183 | 7.9948E-06 | 0.07 | 0.43 | C/T | 0.01 | GRMZM2G092475 | Probable sodium/metabolite cotransporter BASS4 |
S7_128373677 | 7 | 128373677 | 9.3869E-06 | 0.07 | 0.07 | T/A | 0.03 | GRMZM2G416632 | Glutathione transferase23 |
S7_128375218 | 7 | 128375218 | 6.2406E-06 | 0.08 | 0.05 | T/C | 0.32 | GRMZM2G416625 | Purine permease 3 |
S8_34664259 | 8 | 34664259 | 7.0625E-06 | 0.07 | 0.14 | A/C | –0.05 | GRMZM2G051522 | Protein DOG1-like 4 |
MAF, minor allele frequency; R2, proportion of phenotypic variance explained by SNP. aThe exact physical position of the SNP can be inferred from the marker’s name; for example, S1_82702920: chromosome 1; 82,702,920 bp (Ref Gen_v2 of B73).