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. 2020 Nov 2;11:572027. doi: 10.3389/fpls.2020.572027

TABLE 4.

List of significant SNPs and candidate genes associated with GLS resistance in the IMAS association panel evaluated in four environments.

SNP namea Chr Position MLM-P value R2 (%) MAF Allele MAE Putative candidate genes Predicted function of candidate gene
S1_82702920 1 82702920 5.0287E-06 0.06 0.46 G/A 0.09 GRMZM2G506660 ATP binding protein
S1_215340710 1 215340710 7.0783E-06 0.07 0.10 T/C –0.06 GRMZM2G106558 myb146—MYB-transcription factor 146
S2_5924471 2 5924471 8.3283E-06 0.06 0.07 T/C –0.7 GRMZM2G372074 Protein encodes a protease inhibitor/LTP family protein
S2_148656983 2 148656983 6.2212E-06 0.07 0.42 C/G 0.17 GRMZM2G115659 Carbohydrate transporter/sugar porter/transporter
S2_148656984 2 148656984 6.0999E-06 0.07 0.43 G/C 0.17 GRMZM2G115658 Carbohydrate transporter/sugar porter/transporter
S6_150800750 6 150800750 5.8341E-06 0.08 0.06 T/G 0.29 GRMZM2G067156 Unknown
S6_165317183 6 165317183 7.9948E-06 0.07 0.43 C/T 0.01 GRMZM2G092475 Probable sodium/metabolite cotransporter BASS4
S7_128373677 7 128373677 9.3869E-06 0.07 0.07 T/A 0.03 GRMZM2G416632 Glutathione transferase23
S7_128375218 7 128375218 6.2406E-06 0.08 0.05 T/C 0.32 GRMZM2G416625 Purine permease 3
S8_34664259 8 34664259 7.0625E-06 0.07 0.14 A/C –0.05 GRMZM2G051522 Protein DOG1-like 4

MAF, minor allele frequency; R2, proportion of phenotypic variance explained by SNP. aThe exact physical position of the SNP can be inferred from the marker’s name; for example, S1_82702920: chromosome 1; 82,702,920 bp (Ref Gen_v2 of B73).