TABLE 5.

rDNA and satellite repeats as detected by RepeatExplorer, BLASTn and FISH.

	45 rDNA			5S rDNA			CL82 (369 bp)			CL229 (46bp)			CL217 (126 bp)			CL201 (172bp)e
ID	RE (+/−)	BLAST (+/−)	No. of FISH loci	RE (+/−)	BLAST (+/−)	No. of FISH loci	RE (+/−)	BLAST (+/−)	No. of FISH loci	RE (+/−)	BLAST (+/−)	No. of FISH loci	RE (+/−)	BLAST (+/−)	No. of FISH loci	RE (+/−)	BLAST (+/−)	No. of FISH loci
IntA	+	+	4	+	+	2	+	+	1	+	+	2	+	+	2	–	–	0
IntC	+	+	4	–	+	2	–	(+)b	0	–	(+)c	0	+	+	2	–	–	0
PreA	+	+	6	+	+	2	+	+	7	–	(+)c	0	–	+	0	+	+	2
PreC	+	+	6	+	+	2	+	+	7	–	(+)c	0	+	+	0	+	+	2
PalA	+	+	7	+	+	3	+	+	2	+	+	1	+	+	2	–	(+)c	1
PalF	+	+	7	+	+	3	+	+	6	+	+	1	+	+	3+6d	–	(+)c	0
PicF	+	+	7a	+	+	3	+	+	9	+	+	1	+	+	4+8d	+	+	2
PicB	+	+	7a	+	+	3	+	+	6	+	+	1	+	+	2	+	+	2
Hyb2	+	+	5	+	+	2	+	+	4	+	+	1	+	+	1	+	+	2
Hyb3	+	+	5	+	+	2	+	+	4	+	+	1	+	+	1	+	+	1
Hyb4	+	+	5	+	+	2	+	+	6	+	+	1	+	+	1	+	+	2

ID = Sample ID; RE/BLAST (+/−) = RepeatExplorer/BLAST (cluster detected/cluster not detected).^aThe numbers of loci for 45S rDNA in PicF and PicB were reported in Chrtek et al. (2020).^bCL82 was detected in a very low amount in IntC (see Supplementary Table 3) and a closer inspection showed that the corresponding reads displayed a rather low similarity to the sequence of satellite CL82 (see section “Discussion”).^csatellite repeat detected only in trace amounts (see Supplementary Table 3).^dbesides major loci found on all metaphase plates (PalF 3, PicF 4), additional loci (PalF 6, PicF 8) of CL217 occurred in these samples (see section “Results” and Figure 6).^eCL201 was present as two hemizygous loci on non-homologous chromosomes in Pre.